| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0350 |
|---|
| Symbol | |
|---|
| ID | 3672136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 367902 |
|---|
| End bp | 369722 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637709011 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_314108 |
|---|
| Protein GI | 74316368 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0495897 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0419453 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCCG ACGATATGCG CTCCCATCTG GAAGAAATTC TTGCAACGGC ACGCCTGACA
ACTCTGCTTC AGCCGGTCCT CGACATGTCG AAGGGGGTGG TCAGCGGATA TGAGGCACTC
TCCCGCGGAC CGTCGGACAG CCCGCTGCAT GCGCCGCAGA CCTTGTTCCG GGTGGCTGAA
ACGCACGGGC TCGGCACACA GCTTGAATGG GCATGCGTAC GCTCGGCCTT CGCGACCTTC
ACTACGCTCG GTCTTCCCGG ACAACTGTTC GTCAATCTGT CGCCGGCAAG CCTGCTCGAC
CCCGCCTTCG CACCCGCGGC CGTTGTCGCG GCGCTCAAGG GGGCCGACCT CGCGAATGAC
CGTCTGGTTT TCGAGATCAC TGAACATTCC GCGCACGTCG ACTATGGCAG CCTTCGCGAC
GCGGTCCGCG CGCTGCGCTC AGAGGGGATC GACATCGCGA TCGATGATCT GGGCGAAGGT
TTTTCCAGCC TTCGGTTGTG GTCAGAATTG AAGCCCGCCT ACGTCAAGAT CGACAAACAC
TTCATTTCCG GAATTCATCA GGATCCTCAC AAGATCCAGT TTGTGCGTTC GATTCGCCAG
CTCGCCGAGG GCGCGCATTC GTGCGTGATT GCCGAGGGCG TGGAAAATCT GTCCGAACTC
GCCGTGCTCA AGGACCTCGG AATGCGCTAT GTACAGGGCT ACCTCATCGG TCGCCCGTCG
GCGGATCCGA TCCGTCTTCT TCCGCGCGAG GTCGAGGCCT GCCTGCAATC TGGCGTGGTA
AGCGTCCTGC CATGGTCACC GATGCGGGAA ACGCTTCACG CGTCGGCGGA CCGGCTCGTC
GTTCCAGCGC CCGCCGTAAG TCCCGCAACG GTGAGCGAGG ACGTGCTCGA ACTCATGATG
CTTCGCCCCG ACCTGCACGC TCTGGCCGTA GTCGACAATG AGATTCCCGT CGGCATCATT
CACCGCCCCG CGCTGCTGGA CCGTTTCATC AGCCTCTACG GGCGGGAACT TCACGGTCGC
AAGCCCTGCT CGGCCCTGAT GGATGCCGAT CCGCTGATTG TCGACAAGGC CACCCGTATG
AGCGAACTCT CCGAACTCGT CATTCAGAAA GGCAAGGCTG CCTTCACGCA AGGCTTCATC
ATCACGGACG AGGGCCGTTA CCTGGGCCTG GGATCTGGGT TCGATCTGAT GCGCGAGGTG
ACGGAAATGC AGATCGTCGC CGCGCGCTAT GCCAATCCAC TTACGGGGCT GCCCGGCAAT
GTCCCGATTC AGGAACACCT GGAGCGGCTA CTGACGAATT CGCAGACCTT TGTCGCCGCC
TATTTCGATC TCGATCACTT CAAGCCTTAC AACGACGTCT ACGGGTTTCG GCGCGGCGAC
GACATCATTC AGCTCCTCGC GCACATCCTC TGCGATGGCT CCAACCCTGA ACTGGACTTC
GTCGGGCATA TCGGCGGTGA CGATTTTGTC GTCCTGTTCC AGAGCCTGGA CTGGGAGGAG
CGTTGCCGTA CCGTGTTGTC CCGCTTCGAC GAGGAACGGC TCGCCCTGTT CCTCCCCGAA
CACGTCCTGT CGTCCGGTTA CCACACCGAG GACAGGCGCG GCGTCATGAC CTTTCACGGC
CTCGTGACAC TGTCGATCGG AGCGGTCTTC GTCGACCCGA CGCACTTCCA TCATCACCAG
GAGGTAGCGC GCGCAGCCTC GGACGCCAAA CGCATGGCGA AGCGCGTCGA GGGAAACAGC
CTCTTCATCG ACCAGCGCCG CGTTCCCTTC CGGCGGACGT TAGTACTGGA ACCCACGGTG
CCCGAGGCGA ATTGCGCGTG A
|
|---|
| Protein sequence | MSPDDMRSHL EEILATARLT TLLQPVLDMS KGVVSGYEAL SRGPSDSPLH APQTLFRVAE
THGLGTQLEW ACVRSAFATF TTLGLPGQLF VNLSPASLLD PAFAPAAVVA ALKGADLAND
RLVFEITEHS AHVDYGSLRD AVRALRSEGI DIAIDDLGEG FSSLRLWSEL KPAYVKIDKH
FISGIHQDPH KIQFVRSIRQ LAEGAHSCVI AEGVENLSEL AVLKDLGMRY VQGYLIGRPS
ADPIRLLPRE VEACLQSGVV SVLPWSPMRE TLHASADRLV VPAPAVSPAT VSEDVLELMM
LRPDLHALAV VDNEIPVGII HRPALLDRFI SLYGRELHGR KPCSALMDAD PLIVDKATRM
SELSELVIQK GKAAFTQGFI ITDEGRYLGL GSGFDLMREV TEMQIVAARY ANPLTGLPGN
VPIQEHLERL LTNSQTFVAA YFDLDHFKPY NDVYGFRRGD DIIQLLAHIL CDGSNPELDF
VGHIGGDDFV VLFQSLDWEE RCRTVLSRFD EERLALFLPE HVLSSGYHTE DRRGVMTFHG
LVTLSIGAVF VDPTHFHHHQ EVARAASDAK RMAKRVEGNS LFIDQRRVPF RRTLVLEPTV
PEANCA
|
|---|
| |