Gene Tbd_0281 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0281 
Symbol 
ID3671423 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp298185 
End bp298808 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content65% 
IMG OID637708942 
Productpolysaccharide export outer membrane protein 
Protein accessionYP_314039 
Protein GI74316299 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID[TIGR03027] putative polysaccharide export protein, PEP-CTERM sytem-associated 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.585377 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.906054 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCACGA TCAAAAAGCA CCTCTCGCGC GCGAGCCTGC TGCTCGCAGT GGTCGCCGTC 
GCGGGATGCT CGGGTACGCC GACATACCCG CCTGCGCCCG AGCGCACCGG GCAGTACGAC
TGGAATTACC TGGTCGGCCC GGGCGATTCG GTCAACGTCT TCGTATGGCG CAACCCCGAA
GTCTCGGGCA CCTTCCCGGT GCGTCCAGAC GGCAAAATGA CCATGAACCT CGTCGAGGAT
CTGCAGGCGT CCGGCAAGAC GCCGACGCAG CTCGCGCGGG ACATCGAAAA GGCGCTCGGC
AAGTACATCC AGGAACCGAT CGTCACTGTC ATCGTCGGCG GCGGCATCGG GCCGTTCGAC
CAGCAGATCC GCGTGGTCGG CGAAGCCGCC AAGCCCCAGG CGCTCAATTA CCGCGAGAAG
ATGAGCCTCG TCGACCTCAT GATCGCGGTC GGCGGACTCA CCGATTTCGC TGCCGGCAAC
AAGGCCTACA TCCTCCGCAC CGTCGACGGC AAGCAGGAGC GCCTCGGCGT CCGTCTCGAA
GATCTGCTGC GCGGCGGCGA CGTCTCCGCA AACGTCGACA TGCGCCCCGG CGATGTCCTC
GTCGTGCCTG AAAGCCTGTT CTAA
 
Protein sequence
MITIKKHLSR ASLLLAVVAV AGCSGTPTYP PAPERTGQYD WNYLVGPGDS VNVFVWRNPE 
VSGTFPVRPD GKMTMNLVED LQASGKTPTQ LARDIEKALG KYIQEPIVTV IVGGGIGPFD
QQIRVVGEAA KPQALNYREK MSLVDLMIAV GGLTDFAAGN KAYILRTVDG KQERLGVRLE
DLLRGGDVSA NVDMRPGDVL VVPESLF