| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0206 |
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| Symbol | |
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| ID | 3673652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 223282 |
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| End bp | 225519 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637708867 |
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| Product | type IV pilus assembly protein PilQ |
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| Protein accession | YP_313964 |
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| Protein GI | 74316224 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.292447 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.225314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCAC TGCCGAAAAT TGCCCGGAAA ATGGCCCATC GCCTGATCGC GGTCTTCCTA
TTCACCGGCC TGGCCATGGG CCCCGCGGCG CAGGCCGCCG ACGCGCCGCC CACCGCCAAC
GCGGTGCAAA GCGTCGAAAC GACGACCTTG CCCGGCGGCA AGGTGGTGGT CCGTGTCAAC
CTCAAGAAGC CGCTCGCCGC GACACCGGCC GGCTTTACGG TCGGCAATCC GCCGCGGATC
GCACTCGATC TGCCCGATAC CGGCAACGCG ATGGGGCGCA ACACGGTCGA CGCCAATCTC
GGCCCCTTGT CGAACGTGAA CGTCGTGCAG GCGGGGACGC GCACCCGGCT TGTGCTGAAC
CTGAACAAGT CCGTCGAATA TGACGCGCGG ATCGAAGGCA ATAGCCTGCT CGTCGCGCTG
GGCGACGTCG GTGCGGGCGC CACGCCCGTG AATGCGAGCC CGCGATTTGC CGAGGCCGCA
CCTGGCGAGT CGCGTCACAC GATCCGCGAC GTCGACTTCC GCCGCGGCGC GGCCGGCGAA
GCGCGCATCG TGACGACGCT GTCGGACGCA CAGGCGGGCA TCAACATCCG CCAGCAGGCC
AACGGCGTCA CCGTCGACTT CATCGGAACC GAATTGCCGA AAGCCTTGCA GCGTCGTCTC
GACGTCGCCG ACTTCGGTAC GCCGGTGAAA GTGATCGAGA CCTATTCGTT GGGCGACAAC
ACGCGGATGG TGATCCAGCC GCAGGGCGGC TGGGAATACT CGGCCTATCA GACCGATAAC
AGCTTCATCG TCGAGGTCAA GGCGAGCGAC GACGCGCAGA AGAAAACCGC CGACGGGAAG
GTGAAATATA GCGGCGAGAA ACTGTCGCTT AACTTCCAGA ATGTCGAAGT GCGCTCGGTG
CTGCAGGTGA TCGCCGACTT CACCGGCCTC AACATCGTCG CGAGCGATAC GGTCACCGGC
AACCTCACGC TGCGACTCAA AGACGTCCCG TGGGACCAGG CGCTCGACCT GATCATGCAG
ACCAAGGGTC TCGACAAGCG CCAGAACGGC AACGTCATCT GGATCGCGCC GCGCGATGAG
TTGCTGGCCA AGGAAAAGCT CGAATTCGAA GCCAAGAAAC AGGTGGCCGA CCTCGAGCCC
CTGGTCACCG ACTACATCCA GCTCAACTAT CTCCGCGCTG ACGAGGCGCA GACGATGTTG
TACGGCTTCG CCTCGGGTGC GTTCCTGAAC TCCGCGGGCA ACAACGCGGT GAACTGCTCC
ACGCAGGCCC AGGGCCTCGG CGGCGCGGCG GTCGCGCAGG CCATGCAAAA AGGTGAAGGC
GACACCGATC AGAAGGTGCT AACGAAGCGC GGGCGTGCGA CCTACGAACT GAAGACCAAT
ACGCTCATCA TCACCGACAC CGCGAGCAAG ATCGCCGAAG TGCGTGGCCT GCTCGCGCGA
CTCGATGTGC CCGCGCGTCA GGTCATGATC GAAGCGCGTG TCGTCATCGC CGATAGCCTT
TGGAGCCGCG AGCTCGGAGT CCGCCTCGGC ACCCGTCTGT TCAAGGCAAC CGGACGCGAC
AATATCGGCG TCGGCGGGAC CCTGAACGAA TCCGCGTCGA TCGCAGCCGG TGGAACGCCG
ACCGTCACGC CGCAGGTGGA GTTGGGCACC GTGGGAGCCG CCGCCGGACA GATCGCGATG
TCCCTGCTCA ATGCCAGCAA CGGAAACCTG CTCAGCCTGG AGTTGTCGGC GCTCGAAGCG
GACAATCGCG GCAAGATTCT CTCCAACCCG CGCGTGATGA CGTCCAACCA GAAGCCCGCC
GTGATCCTGA ACGGTACGCA AATTCCGTTC ATCACACCGG GTACTGCGAA CAGCCCCGCG
ACCGTGACGT TCAAGGACGC ATTCCTGTGT CTGCTCGTCG ACCCTCAGAT ACTGAACAAC
GATGCGCTGA TCATGACGAT CGAAGTGCAA AAGGATGCGA TCGATACCGC CAATGCGGCC
GTGGGGGCCG ACATCATCGC CCCGGCGATC GCCACGCGCC GGATCAAGAC GCAGGTTCGC
GTGAACAACG GCGAGACGCT GGTCCTCGGT GGCATATTCG ACCAGACCGA GTTCAACAAC
GTCGACAAGG TGCCCTTCCT CGGCGACGTG CCCGGGCTCG GCAACCTGTT CAAACGGACC
AACAAGCAGG ACCAGAAGAC CGAGATGATC GTGTTCATCA CGCCACGCAT TCTCGACGAG
CGGCTGTCCC TGCGCTGA
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| Protein sequence | MNALPKIARK MAHRLIAVFL FTGLAMGPAA QAADAPPTAN AVQSVETTTL PGGKVVVRVN
LKKPLAATPA GFTVGNPPRI ALDLPDTGNA MGRNTVDANL GPLSNVNVVQ AGTRTRLVLN
LNKSVEYDAR IEGNSLLVAL GDVGAGATPV NASPRFAEAA PGESRHTIRD VDFRRGAAGE
ARIVTTLSDA QAGINIRQQA NGVTVDFIGT ELPKALQRRL DVADFGTPVK VIETYSLGDN
TRMVIQPQGG WEYSAYQTDN SFIVEVKASD DAQKKTADGK VKYSGEKLSL NFQNVEVRSV
LQVIADFTGL NIVASDTVTG NLTLRLKDVP WDQALDLIMQ TKGLDKRQNG NVIWIAPRDE
LLAKEKLEFE AKKQVADLEP LVTDYIQLNY LRADEAQTML YGFASGAFLN SAGNNAVNCS
TQAQGLGGAA VAQAMQKGEG DTDQKVLTKR GRATYELKTN TLIITDTASK IAEVRGLLAR
LDVPARQVMI EARVVIADSL WSRELGVRLG TRLFKATGRD NIGVGGTLNE SASIAAGGTP
TVTPQVELGT VGAAAGQIAM SLLNASNGNL LSLELSALEA DNRGKILSNP RVMTSNQKPA
VILNGTQIPF ITPGTANSPA TVTFKDAFLC LLVDPQILNN DALIMTIEVQ KDAIDTANAA
VGADIIAPAI ATRRIKTQVR VNNGETLVLG GIFDQTEFNN VDKVPFLGDV PGLGNLFKRT
NKQDQKTEMI VFITPRILDE RLSLR
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