| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0204 |
|---|
| Symbol | |
|---|
| ID | 3673650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 222138 |
|---|
| End bp | 222755 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637708865 |
|---|
| Product | type IV pilus assembly membrane transmembrane protein |
|---|
| Protein accession | YP_313962 |
|---|
| Protein GI | 74316222 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3167] Tfp pilus assembly protein PilO |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.273451 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTTG ACGACCTCAA CAACCTCGAT CTGAAGGCCG CCGCCGACTG GCCGCTGCCG
ACCAAGCTCG TCGCCTTGTC GCTGCTGGCC GTCGCGATCG TTGCGGCCGG ATGGTGGTTC
GACTGGCGGG GTGGCATGGA AGCCGTCGAC GCCGCGAAGC AGAAGGAAAC GGAATTGCGC
AGCGTCTTCG CGACCAAGAA GAATCAGGCG ATCAACCTCG AGGCGTACCG GAAGCAGCTG
ACCGACATCG AGCAGGCCTT CGGCGCCTTG CTCAAGCAGC TGCCGAACAA GCAGGAAATG
GACGCGCTGA TCACCGACGT CAACCAGGCC GGACTCGGGC GCGGGCTGCA ATTCGAGCTG
TTTCGCCCCG AGGCCGAGAC GGTCTCCGAG TTTTATGCGG AAACACCGAT CCGCGTCAAA
GTCACGGGCG GCTATCACGA TGTCGCCGCG TTCGTCAGCG ACGTCTCCAA GCTGTCGCGC
ATCGTGACGC TGCACGACAT TGCGATGGTG CCATCCAAGG ATCTGCTGAA CATGGACGCG
ACGGTCAAGA CCTACCGCTA TCTCGACGAC GAGGAAGTCA TCGCGCGGAA ACAGAAAACC
AAGGAGCAGC CGAAATGA
|
|---|
| Protein sequence | MTFDDLNNLD LKAAADWPLP TKLVALSLLA VAIVAAGWWF DWRGGMEAVD AAKQKETELR
SVFATKKNQA INLEAYRKQL TDIEQAFGAL LKQLPNKQEM DALITDVNQA GLGRGLQFEL
FRPEAETVSE FYAETPIRVK VTGGYHDVAA FVSDVSKLSR IVTLHDIAMV PSKDLLNMDA
TVKTYRYLDD EEVIARKQKT KEQPK
|
|---|
| |