Gene Tbd_0185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0185 
Symbol 
ID3673631 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp196827 
End bp197966 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content63% 
IMG OID637708846 
Productputative transmembrane cytochrome C-type biogenesis transmembrane protein 
Protein accessionYP_313943 
Protein GI74316203 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component 
TIGRFAM ID[TIGR03144] cytochrome c-type biogenesis protein CcsB 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.107492 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.161414 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACTCG CTCTCAACCA TCCCGCCCCG CTTTTCAAGC GCCTTGCCTG GTTCGACTGG 
CTGTTCGCCG CCATCGTCGC CGCCGGCGGC CTGTTCGCGC TCTCGCGCTT CGGCGAATAC
ATGGACATCT ACGAGAAAGG CATCCTGCTG GCGTCGATCC CGGCACTCGC GGTGTTCGGT
TGGTTCTGGA AGCCCTTCCG CCCGCTCTTC ATCGTCGTCG GCGCACTCAG TCTTTTCGCG
ATCAGCCAAT ATCAGGGCGA ACTCGGGCGC ATGGAGGAGG CCTTCTTCCT CAAGTACCTG
ATCTCCAGCC AGGCCGCGAT CATGTGGATG TGCGCGCTGT TCGGTCTCGC CACCGTCGCC
TACTGGGGCG GCATGCTCGC GCGTTCCGAA TTCACGATGA AGACCGGCAG CAGCCTGACC
TGGGCCGCGA TCACGCTCGG CTACGTCGGT CTCATGGTGC GCTGGTACGA GTCCTATCTG
ATCGGCACCG ACATCGGGCA CATCCCGGTT TCCAATCTCT ACGAAGTATT CGTCCTGTTC
TGCCTGATCA CGGCGATGAT GTACCTCTAC TACGAAGCCC GCTATCAGAC GCGGACCATG
GGCGCCTTCG TCCTGCTCGT GATCTCGGCC GCGGTCGGCT TCATCCTCTG GTACACGCTC
GACCGCGGTG CACATGAAAT CCAGCCGCTG GTGCCCGCGC TCAAGTCGTG GTGGATGAAG
CTGCACGTCC CCGCGAACTT CATCGGCTAC GGCGCATTTT CGATCGCGGC GATGCTCGGC
GCGGCATATC TTCTCGCCGC ACGCGGCATT CTCGCGACCC GCCTGCCACG GCTTGAGGTG
ATCGACGACG TCATGTACAA GGCCATCGCG ATCGGCTTCG CCTTCTTCAC GATCGCGACC
ATCCTCGGCG CGATGTGGGC GGCCGAGGCT TGGGGTGGCT ACTGGTCGTG GGACCCGAAG
GAGACCTGGG CGCTGATCGT GTGGCTGAAC TACGCAGCCT GGCTGCACAT CCGCCTGGTC
AAGGGCCTGC GCGGGCCGAT GCTCGCCTGG TGGGCGCTGG TCGGACTCTT CGTGACGACC
TTCGCGTTCC TCGGCGTGAA CATGTTCCTC TCCGGCCTGC ACTCCTACGG CGAACTCTGA
 
Protein sequence
MELALNHPAP LFKRLAWFDW LFAAIVAAGG LFALSRFGEY MDIYEKGILL ASIPALAVFG 
WFWKPFRPLF IVVGALSLFA ISQYQGELGR MEEAFFLKYL ISSQAAIMWM CALFGLATVA
YWGGMLARSE FTMKTGSSLT WAAITLGYVG LMVRWYESYL IGTDIGHIPV SNLYEVFVLF
CLITAMMYLY YEARYQTRTM GAFVLLVISA AVGFILWYTL DRGAHEIQPL VPALKSWWMK
LHVPANFIGY GAFSIAAMLG AAYLLAARGI LATRLPRLEV IDDVMYKAIA IGFAFFTIAT
ILGAMWAAEA WGGYWSWDPK ETWALIVWLN YAAWLHIRLV KGLRGPMLAW WALVGLFVTT
FAFLGVNMFL SGLHSYGEL