| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0166 |
|---|
| Symbol | |
|---|
| ID | 3673612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 179706 |
|---|
| End bp | 181688 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637708827 |
|---|
| Product | ATP-dependent DNA helicase Rep |
|---|
| Protein accession | YP_313924 |
|---|
| Protein GI | 74316184 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01074] ATP-dependent DNA helicase Rep |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.119958 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGC TCGCAGCGCT CAACCCGCCG CAGCGCGAAG CGGCGAAATA CCTCGACGGC
CCGCTCCTCG TGCTGGCCGG GGCGGGGTCG GGCAAGACCC GCGTCATCAC GCACAAGATC
GCCTACCTGA TCGGCGAGTG CGGCTACAAG CCGGGCTCGA TCGCCGCGAT CACCTTCACC
AACAAGGCCG CGCGCGAGAT GGCCGAGCGC GCCGCCAAGC TGACCCACGG GGTCAACACG
AAGGGCCTGA TCGTCACGAC CTTCCACTCG ATGGGCCTCA GAATGCTGCG CGAGGACGCG
AAGTTCGCCG AGCTCAAGCC CGCATTCTCG ATCCTCGATT CGGCCGACGC CGCCGGCATC
GTGTCGGAGA TCATCAAGAC CACCGACAAG CAGGAAATCC GCCGCGCGGT GTCGCGCATC
TCGTTGTGGA AGAACGAGCT CAAGTCGCCC GCCGCCGCCC TGGCTTCGGC TGAGGACGAC
AACGCGCGCG TGTACGCAAA GATCTACGAC CGCTACGACG CGACGCTGCG CGCCTATCAG
GCGGTCGACT TCGACGACCT GATCCGCCTG CCGGCCGAAC TGCTCGACAC CCACGCCGAG
CTGCGCGAGA AGTGGCAGAA CCGCCTGCGC CACATCCTCG TCGACGAATA CCAGGACACC
AACGTCGCGC AGTACCGGCT ACTGCAGAAG CTCACCGGCG TGCGCGCCGC GTTCACCGCG
GTCGGCGACG ACGACCAGGC GATCTACGGC TGGCGCGGCG CCTCGGCCGA CAACCTCAGG
CAGCTCAACG AGGACTACCC GCATCTGCAT GTCGTCAAGC TCGAGCAGAA CTACCGCTCG
ACCGTACGCA TCCTCAAGGC CGCCAACAGC CTCATCGCCA ACAACCCCAA GCTCTTCGAA
AAGCGCCTGT GGAGCGACCT CGGCCACGGC GACGCGATCC AGGTCATGCC GACCAAGGAC
GACGAGCACG AGGCCGAATC GGTCGTCATG CGCCTGCTAT CGCACAAGTT CCAGCACCGC
ACCGAGTGGC GCGACTACGC GATCCTCTAC CGCGGCAACT ACCAGGCGCG CGTGTTCGAG
CAGGCGCTCC GGAACGAGAA GGTGCCCTAT CAGCTCTCGG GCGGCCAGTC GTTCTTCGAC
AAGGCGGAAA TCAAGGACGT GATCGCCTAC CTGCGCCTGA TCGCCAACAG CGACGACGAC
CCTGCCTTCA TTCGCGCCGT CACCACGCCC AAGCGCGGCA TCGGCGCCGC CACGCTCGAA
AAGCTCGGGC AGGTCGCCGC GACCCTGCAC GTCAGCCTGT TCGAGGCAGT CTTTTCGGCC
GCCGCCGCAT CACAGATCGG TGAGCGACAT CTCACGCCAC TCACCGAGTT CTGCAACTTC
ATCAACCGCA TGGAGGAGCG CGTCGCGCGC GAGCCGGCCG GCGAACTGCT CGACGACCTC
CTGAAGACGA TCGGCTACGA GGTCTATCTC TTCGACCAGG ACGACCAGCG CGCGGCGCAG
AGCAAATGGA ACAACGTACT CGAATTCGCC GCCTGGATTA CGAAAAAAGG CGAAGAGGAC
GAGAAGAACC TGCTGCAGCT GACGCAAACC ATCGCGCTGA TCACGCTGCT CGAAGGCCGC
GAAGAGGAAG AGTCCGACGC CGTACGCCTG TCGACCCTGC ACGCAGCCAA GGGACTCGAA
TTCGGCCACG TCTTCCTGGT CGGCGTCGAG GAGAACATCC TGCCGCACCG CGACGCGGTC
GACGAAGGCC GCCTCGAAGA GGAGCGCCGC CTGATGTACG TCGGCGTCAC CCGCGCGCGC
AAGTCGCTGA CGCTGTCCTA CTGCTCGCGC CGCAAGCGCG CCCGCGAGTC GGTCGCCTGC
GATCCGTCAC GCTTCATCGA TGAATTGGGC GATGAGGTGC GCATGCCGGA AAAACCGACG
ACCGCGGAAG CGAAGGCCAG CGGCAGCGAC CGGCTGGCGG CGTTGAAGGC GATGCTGGGC
TGA
|
|---|
| Protein sequence | MSLLAALNPP QREAAKYLDG PLLVLAGAGS GKTRVITHKI AYLIGECGYK PGSIAAITFT
NKAAREMAER AAKLTHGVNT KGLIVTTFHS MGLRMLREDA KFAELKPAFS ILDSADAAGI
VSEIIKTTDK QEIRRAVSRI SLWKNELKSP AAALASAEDD NARVYAKIYD RYDATLRAYQ
AVDFDDLIRL PAELLDTHAE LREKWQNRLR HILVDEYQDT NVAQYRLLQK LTGVRAAFTA
VGDDDQAIYG WRGASADNLR QLNEDYPHLH VVKLEQNYRS TVRILKAANS LIANNPKLFE
KRLWSDLGHG DAIQVMPTKD DEHEAESVVM RLLSHKFQHR TEWRDYAILY RGNYQARVFE
QALRNEKVPY QLSGGQSFFD KAEIKDVIAY LRLIANSDDD PAFIRAVTTP KRGIGAATLE
KLGQVAATLH VSLFEAVFSA AAASQIGERH LTPLTEFCNF INRMEERVAR EPAGELLDDL
LKTIGYEVYL FDQDDQRAAQ SKWNNVLEFA AWITKKGEED EKNLLQLTQT IALITLLEGR
EEEESDAVRL STLHAAKGLE FGHVFLVGVE ENILPHRDAV DEGRLEEERR LMYVGVTRAR
KSLTLSYCSR RKRARESVAC DPSRFIDELG DEVRMPEKPT TAEAKASGSD RLAALKAMLG
|
|---|
| |