Gene Tbd_0159 details

Gene Information

• Locus tag: Tbd_0159
• Symbol: cbbT
• ID: 3673605
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thiobacillus denitrificans ATCC 25259
• Kingdom: Bacteria
• Replicon accession: NC_007404
• Strand: +
• Start bp: 170335
• End bp: 172320
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 637708820
• Product: transketolase
• Protein accession: YP_313917
• Protein GI: 74316177
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0021] Transketolase
• TIGRFAM ID: [TIGR00232] transketolase, bacterial and yeast

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 11
• Fosmid unclonability p-value: 0.311309
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCAACCC GTACCGACCT GTCGAACGCC ATCCGCGCAC TCGCGATGGA TGCAGTCGAA 
AAAGCGAAAT CCGGCCACCC CGGCGCCCCG ATGGGCATGG CGGAAATCGC CGAGACGCTG 
TGGAACCATC ATATGCGTCA CAACCCGGTC AACCCCAAGT GGGCCGACCG TGACCGCTTC 
GTGCTGTCGA ACGGTCACGG CTCGATGCTG ATCTATGCGC TGTTGCACCT GACCGGTTAC 
GACCTGTCGA TGGACGACCT CAAGCAGTTC CGCCAGTTGC ACTCGAAGAC CCCGGGCCAC 
CCCGAGTACG GCTATGCGCC CGGCGTCGAG ACGACGACCG GCCCGCTCGG CCAGGGCATC 
ACCAACGCGG TCGGCATGGC GATGGCGGAA AAAGTGCTGG CGCACGAATT CAATAAGCCC 
GGCCACAGCA TCGTCGACCA CCACACCTAC GTGTTCCTCG GCGACGGCTG CATGATGGAA 
GGCATCTCGC ACGAGGCCTG CGCGCTCGCC GGCACCTGGA AGCTCAACAA GCTGATCGCG 
TTCTGGGACG ACAACGGCAT TTCGATCGAC GGCCACATCG AGCACTGGTA CACCGACGAC 
ACGGCCAAGC GTTTCGAAGC CTACGGCTGG CAGGTCATCC CGAACGTCGA CGGCCACGAC 
GTCGTCGCGA TCGAAGCCGC GATCCAGAAG GCCAAGGCGA GCAGCGACAA GCCCACGCTG 
ATCTGCTGCA AGACGATCAT CGGCAAGGGC TCGCCGAACA AGGCCGGTAC GCACGACGTG 
CACGGCGCAG CGCTCGGCCA CGACGAAGTC GAGGCGACCC GCAAGAACAT GGGCTGGAAT 
TCGCCGGCGT TCGAAGTGCC GGCCGACATC TACGCCGGCT GGGACGCGAA GACCAAGGGC 
CAGGGGCTCG AGACGCTGTG GAACAACAAG TTCGCCGAGT ACAAGAAGGC CTTCCCCGCC 
GAAGCCGCCG AATTCGAGCG CCGCATGAAG GGCGAACTGC CCGCCAACTG GAAGGCGCAC 
GTCGCCGAGA AGCTGGCTGC GATCAACGCC AAGGGCGAGA CCGTCGCCAC GCGCAAGGCC 
AGCCAGATCG CGATCAACGC GCTGGCTTCC GCGCTGCCGG AGTTCCTCGG CGGTTCGGCC 
GACCTGACCG GCTCCAACCT GACCAACTGG GAAGGCTGCC ACCCGGTGCG CCACGGCAAG 
CCCGGCAACT ACATCAGCTA CGGCGTGCGT GAATTCGGCA TGGCCGCGAT CATGAACGGC 
ATGGCGCTGC ACGGCGGCCT CTTGCCCTTC GGCGGCACCT TCCTGATGTT CTCCGAATAC 
TCGCGCAACG CCATCCGCAT GGCCGCGCTG ATGAAGCAGC GCGTGATCCA CGTGTTTACG 
CACGATTCGA TCGGTCTCGG CGAAGACGGC CCGACCCACC AGCCTGTCGA GCAGACCGCG 
ACCCTGCGCA TGATCCCCAA CATCGACGTC TGGCGTCCGT GCGACACCGT CGAGACCATG 
GTCGGCTGGG CGCACTCGGT CGAGCGCACC GACGGCCCGA CCTGCCACAT CCTCTCGCGC 
CAGAACCTGC CGTTCATGCA GCGCGACGAC GCGACGCTCG CGAGCATCGC AAAGGGCGGC 
TATGTGCTGA AGGATGCGGC CGGCGCGAAG GCCGTCATCA TCGCCACCGG CTCCGAAGTC 
GAACTCGCGG TGAAGGCCGC TGACACGCTC GCCGCCGAAG GCATCGCGGT GCGCGTCGTC 
TCGATGCCGT CGACCAACAC CTTCGACCGC CAGGACGCCG CCTACCGCGA AAGCGTGCTG 
CCGAAGGGCC TGCCGCGCGT CGCCGTCGAA GCCGGCGTCA CCGACTTCTG GCGCAAGTAC 
GTGGGTCTCG AAGGCGCCGT GGTCGGCATC GACACCTTCG GCGAATCGGC CCCTGCGCCC 
GCGCTGTTCA AGCATTTCGG CATCACCGCC GAGGCCGTCG CGGCCGCGGT CAAGAGCGTG 
CTGTAA 

 

Protein sequence

MPTRTDLSNA IRALAMDAVE KAKSGHPGAP MGMAEIAETL WNHHMRHNPV NPKWADRDRF 
VLSNGHGSML IYALLHLTGY DLSMDDLKQF RQLHSKTPGH PEYGYAPGVE TTTGPLGQGI 
TNAVGMAMAE KVLAHEFNKP GHSIVDHHTY VFLGDGCMME GISHEACALA GTWKLNKLIA 
FWDDNGISID GHIEHWYTDD TAKRFEAYGW QVIPNVDGHD VVAIEAAIQK AKASSDKPTL 
ICCKTIIGKG SPNKAGTHDV HGAALGHDEV EATRKNMGWN SPAFEVPADI YAGWDAKTKG 
QGLETLWNNK FAEYKKAFPA EAAEFERRMK GELPANWKAH VAEKLAAINA KGETVATRKA 
SQIAINALAS ALPEFLGGSA DLTGSNLTNW EGCHPVRHGK PGNYISYGVR EFGMAAIMNG 
MALHGGLLPF GGTFLMFSEY SRNAIRMAAL MKQRVIHVFT HDSIGLGEDG PTHQPVEQTA 
TLRMIPNIDV WRPCDTVETM VGWAHSVERT DGPTCHILSR QNLPFMQRDD ATLASIAKGG 
YVLKDAAGAK AVIIATGSEV ELAVKAADTL AAEGIAVRVV SMPSTNTFDR QDAAYRESVL 
PKGLPRVAVE AGVTDFWRKY VGLEGAVVGI DTFGESAPAP ALFKHFGITA EAVAAAVKSV 
L