Gene Tbd_0155 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0155 
Symbol 
ID3673601 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp167369 
End bp168097 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content72% 
IMG OID637708816 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_313913 
Protein GI74316173 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.388772 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.374711 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTCCC CGCGCTTCTT CCTCGACCAG ACGCTGAGCC TCGGCGCCCG CTTCGGCCTG 
CCCGCCGGCC CGGCGCGTCA CGCCGCCCGC GCGCTGCGGC TCGCGGCAGG CGACGCGCTC
ACGCTGTTCA ACGGTCGCGG CGGCGAATAC ACGGCCAGTG TCGAGCGCAT CACCCGGGAC
GAGGTTGCGG TCGCGATCAC GGGCTTTCGC GAGATCGAAC GCGAATCGCG TTTGGCAATC
ACGCTGGCGC AGGGGATATC GAGCGGCGAG CGCATGGACT ACACGCTGCA AAAGGCGACG
GAACTCGGCG TGACGGCGAT CCAGCCGATC GCCGCCAAGC GCAGCGTCGT CAAGCTCGCC
GGTGAGCGCG CCGAGAAACG CGTCGCGCAC TGGCAGGGCG TCGTCGCGAG CGCCTGCGAG
CAGTGCGGGC GCAACCGGCT GCCGTCGATC GCGGCGCCGT TGCCGCTCGC CCAGTGGCTC
GGCACGGGCA CCGACGAGCG TCTGCTGTTC CTCTCGCCGC TTGCGCAGGC CCGACTCGCC
GATCTCGCCG CGCCGAGCGG ACGCGACGTC CTGATCGCGG GCCCGGAAGG CGGTTTCGAA
GCCGACGAAA TCGCGGCGCT ACATGCGGCC GGCGCCGTGC CGATCCGCCT CGGCCCGCGC
GTGCTGCGCA CCGAAACCGC TGCACTCGCG GCGCTGGCTG CGATGCAGAC GCTCTGGGGC
GATTTCTGA
 
Protein sequence
MSSPRFFLDQ TLSLGARFGL PAGPARHAAR ALRLAAGDAL TLFNGRGGEY TASVERITRD 
EVAVAITGFR EIERESRLAI TLAQGISSGE RMDYTLQKAT ELGVTAIQPI AAKRSVVKLA
GERAEKRVAH WQGVVASACE QCGRNRLPSI AAPLPLAQWL GTGTDERLLF LSPLAQARLA
DLAAPSGRDV LIAGPEGGFE ADEIAALHAA GAVPIRLGPR VLRTETAALA ALAAMQTLWG
DF