| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0152 |
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| Symbol | |
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| ID | 3671711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 162197 |
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| End bp | 164983 |
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| Gene Length | 2787 bp |
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| Protein Length | 928 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637708813 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_313910 |
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| Protein GI | 74316170 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.575219 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCCT GGTTCGGACG ACTTTCGCTG CGTTACAAAC TGACGCTCGC CGCGCTCGCC
GTCGAGGCGG TGATGCTGGC CTTGCTGATC GCCAACGGCG TCCAACACAC CCGCGACGAG
CTGCAGCAGC AGGCGGAGCG CCACGTCCGC GAGACCGGAC AGACGCTCGC CGGCGCGCTG
CTGGCGCCGC TCGCGCAGCG TGACGACGCG AGCGTCGGCG AAATCGTCGA CGCGCTGCAG
CGCGACGGCG GCCTCAAGAT GGTCGCCGTG CGCGACAGCA GCGAGCGCCT CGTGCATCAG
AGCGGGACCG AGGGCACCCG CGACGATTTC CGGGTGATGC AGCCGGTCAC GTTCGCCGGC
CAGCACTACG GCGAGGTCGC ACTCGTGCTG TCGGGCGCGT TCATCGCCGA GGCCCGCGCC
CGCTACGTGC GCGAAAGCCT CTCGATCGCG CTCGCGGCCC TGCTCGTCAC CGGCGTGCTG
CTCGCGCTGT CGACGGGCGG CGTGATCCGC CGCTTCGAGG TTCTCACCCG GGCGAGCCGG
CGCATGGCGC AGGGCGACCT CGACGTCAAG CTGACCGGCG AGGGGGAGGA CGAGATCGGG
CAGCTGATAG GCACCTTCAA CCGCATGGCC GAATCGGTGC GTTTCAACAT CGATCGCGCG
CGCGAAAACG AGGCGCGCTT CCATGCCATC GCCGACTACA CCCACGACGT AGAATTTTGG
CTCTCGCCCG AGGGCAAGCT GTTGTGGATC AACCCCTCGG TCGAGCGCAT GCTCGGCTAC
AGCGTCGGCG AATGCCTCGA CCAGATGCGC TTTCCGGCCG ACATCATTCA TCCCGACGAC
CGCGGCGCGG CCGAGGTGCA GCTGCGCCTG GCGCTGCGCG GCACCTCGGG TCAGGGCTAC
GCGATGCGGA TCTGTCGCAA GGACGGCGGA CATTTCTGGG TGGCTGTGAA CTGGCAGCCG
ATCCACGACG CGAGCGGCGT ATATCAGGGC ATACGCGCGA GCCTTCACAG CATCGACGAC
CTCAAGGCGA CCGAGGCGAA TCTGCGGCTC GCGATCAAGG AACTACGGAC GGCCGAAACC
CTGCAACGCA CGTATCTCGA AGAAACCGAG CAGGAGCGCG CGCGCCTCGT CTCGCTGCTC
TCGGCGATGA ATCTCGGCAT CCTGTTCGTC GCCCCGGACG GGCGGGTGAT CTATCACAAC
CCGGTCTTCG GCAGGATGTG GATGATCGAC GATTCGGCCG AACTGATCGG CCTGCCGGTG
CACGAGGTGC TCACGCGCTC CGCGGCGACG CTGGCCGAGC CCGACCACTT CTCGCGGCAC
CTGCGCGCCG TGCTCGAGAC GCACGAATCG TCTGAGAGCT ACGAGATCCA GATGACCGAC
GGCCGCGTCA TCACCGAGCT CGACTACCCG GTGCGCGACC GCGAAGGCCG CTTCATCGGC
CACCTGTGGA TCTACGAAGA CGTCACGCGC GAACGCCAGA CCGCCGAGCG GCTGGTGTAT
CTGGCCGAGC GCGACGCGCT GACCGGCCTC TACAACCGCC ATCGCTTCCA GCAGGAGCTC
GCACGCACGA TGCTCGACAG CGACCGCCAG AAGATGCAGT GCGCGGTCAT GTTCTTCGAC
CTCGACGAAT TCAAGACCAT CAACGACAGC TACGGCCATC GTGCCGGCGA CGCGCTGCTG
ATCCGCGTGG CCGGCGAGAT CAGCGCGCTG GTGCGGCGTA ACGAAGTGCT CGCGCGCCTC
GGCGGCGACG AGTTCGCGAT TCTGCTCCCG GCGCTGCAGG ACAACGAAGC CGAAGCGCTG
GCCGACCGCG TCGTCCACGC GATCGCGCAG ATTCCCTTCC GCTTCGAGGG CCAGAGCCTG
CGCGTCACCA CGAGCGTGGG CATCGCGTAC TACCCCGCGC ACGCCGTCGA TGCCGACGAC
CTCGTCGCCC GCGCCGACAT CGCCATGTAC CAGGCCAAGG ACGCGGGCAA GAACACCTGG
CGCGTCTTCC GTGCGGACAG CGCCGCCGAC AGCGAAATGC GCACCCGCCT GTCGTGGGGC
GAACGCATCA GCAACGCGCT CGACAAGGGA CTCTTCCAGC TCCATTTCCA GGGCGTCTAC
CGCGCGGACG ACGGCGCGCT CTCGCATCTC GAAGCGCTTG TGCGGATGAC CGACGAGCAC
CGCCCCGATC AGCTCATCAT GCCGGTGCAC TTCATCCAGC GCGCCGAAAA GAGCGGACGC
ATCCTCGACA TCGACCGCTG GGTCGTCCAC GAGACGATCC AGTTGCTCGC CGCCAACCCC
TGCATCCCCT CGATCGCGGT CAACCTGTCG GGGCGCTCGC TGTCCGAGCC GAGCCTGCCG
CAGACGATCG GTAACGGCCT GCGCGAGGCC GGAGTCAATC CGAGCCGGCT GATCTTCGAG
ATCACCGAGA CCGCGGCGGT GGCTGACCTG CAGGACGCGC AGCGCATGAT CGAAGCGCTG
CGCCAGCTCG GATGCGGCGT CTGCCTCGAC GATTTCGGCG TCGGCTTCGC CTCGTTCGCC
TACCTCAAGC ATCTCGACGT CGACACGATC AAGATCGACG GCATCTTCAT CCGCGACCTG
CCCAACGACC CCGACAACCA GGTGTTCGTG CAGGCGATGG TCAGCGTCGC GCTCGGACTC
GGCAAATCGG TCGTCGCCGA ATACGTCGAG GACGGCGCGA CGCTCGCCTT GCTACGCCAG
TTCGGCGTCG ACCTGGTCCA GGGCTATTAC CTCGACCGTC CGGTCGCCGC CCACCCGGCG
CTGCGCGCCG AGGCCTGCAG CGCCTGA
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| Protein sequence | MKAWFGRLSL RYKLTLAALA VEAVMLALLI ANGVQHTRDE LQQQAERHVR ETGQTLAGAL
LAPLAQRDDA SVGEIVDALQ RDGGLKMVAV RDSSERLVHQ SGTEGTRDDF RVMQPVTFAG
QHYGEVALVL SGAFIAEARA RYVRESLSIA LAALLVTGVL LALSTGGVIR RFEVLTRASR
RMAQGDLDVK LTGEGEDEIG QLIGTFNRMA ESVRFNIDRA RENEARFHAI ADYTHDVEFW
LSPEGKLLWI NPSVERMLGY SVGECLDQMR FPADIIHPDD RGAAEVQLRL ALRGTSGQGY
AMRICRKDGG HFWVAVNWQP IHDASGVYQG IRASLHSIDD LKATEANLRL AIKELRTAET
LQRTYLEETE QERARLVSLL SAMNLGILFV APDGRVIYHN PVFGRMWMID DSAELIGLPV
HEVLTRSAAT LAEPDHFSRH LRAVLETHES SESYEIQMTD GRVITELDYP VRDREGRFIG
HLWIYEDVTR ERQTAERLVY LAERDALTGL YNRHRFQQEL ARTMLDSDRQ KMQCAVMFFD
LDEFKTINDS YGHRAGDALL IRVAGEISAL VRRNEVLARL GGDEFAILLP ALQDNEAEAL
ADRVVHAIAQ IPFRFEGQSL RVTTSVGIAY YPAHAVDADD LVARADIAMY QAKDAGKNTW
RVFRADSAAD SEMRTRLSWG ERISNALDKG LFQLHFQGVY RADDGALSHL EALVRMTDEH
RPDQLIMPVH FIQRAEKSGR ILDIDRWVVH ETIQLLAANP CIPSIAVNLS GRSLSEPSLP
QTIGNGLREA GVNPSRLIFE ITETAAVADL QDAQRMIEAL RQLGCGVCLD DFGVGFASFA
YLKHLDVDTI KIDGIFIRDL PNDPDNQVFV QAMVSVALGL GKSVVAEYVE DGATLALLRQ
FGVDLVQGYY LDRPVAAHPA LRAEACSA
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