| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0131 |
|---|
| Symbol | |
|---|
| ID | 3673910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 140111 |
|---|
| End bp | 142882 |
|---|
| Gene Length | 2772 bp |
|---|
| Protein Length | 923 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637708791 |
|---|
| Product | protein translocase subunit secA |
|---|
| Protein accession | YP_313889 |
|---|
| Protein GI | 74316149 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
|---|
| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.449185 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAGAT TCAGCGGTTT TCCGCGTCCT GCGGGCATTT CGGATTCCCT CATGCTGCAA
TCCCTGTTCA AGAAAGTCTT TGGTAGCCGC AACGAGCGGC TGGTCAAACA ATACCTGCAA
AAGGTCAAGG CGATCAACGC GCTCGAGCCG GCGATGGAAC AATTGTCGGA CGCCGAACTG
GCGGGCAAGA CCGCGGACTT CAAGGCGCGC ATCGAGCAGG GCACGTCGCT CGACACGCTG
TTGCCCGAGG CCTTCGCGGT CGTGCGCGAG GCGGCGCGCC GGGTGCTCGG CCTGCGTCAC
TACGACGTGC AGATGGTCGG CGGCATGGTC CTGCACGACG GCAAGATCGC CGAGATGCGT
ACCGGTGAAG GCAAGACGCT GATGGCAACG CTGCCGGCCT ACCTCAACGC GCTCGCCGGC
AAAGGCGTGC ACGTCGTGAC CGTGAACGAT TACCTCGCGC GCCGCGACGC CGAATGGATG
GGCCGCGTCT ACGGCTTCCT CGGCCTCACG ACCGGCGTCA ACCTCTCGCA CATGCCGCAC
GCCGAGAAGC AGGCCGCCTA TGCCGCCGAC ATCACCTACG GCACCAACAA CGAATACGGC
TTCGACTATC TGCGCGACAA CATGGTTTTC GAGGTCGGCG AGAAGGTGCA GCGACCGCTC
GCCTTCGGCG TCATCGACGA GGTCGACTCG ATCCTCATCG ACGAGGCGCG CACGCCGCTC
ATCATCTCGG GGCAGTCGGA AGAGAACACC GCGCTCTACC AGCAGGTCAA CCTCGTGCCG
CCGCGGCTGA CCCGGCAGAA GGACGAGGAA TCCGAGGGCG ACTACTCGGT CGACGAGAAA
TCGCGGCAGG TGCTGCTGTC CGAAGCCGGG CACGAGAAGG TCGAGGAGAT CCTGACCGAG
ATGGGGCTGC TGCAACCCGG CGGCAGCCTC TACGACGCGT CCAACATCAT GCTCATGCAC
CACGTCTACG CGGCCCTGCG TGCGCATGCA CTGTTCTTCA AGGACCAGCA CTACGTCGTG
CAGAACGGCG AAGTCGTCAT CGTCGACGAG TTCACGGGCC GCCTCATGAG CGGGCGGCGC
TGGTCCGAAG GCTTGCACCA GGCCGTCGAA GCGAAGGAAG GCGTGGCGAT CCAGAAGGAG
AACCAGACGC TCGCGTCGAT CACCTTCCAG AACTTCTTCC GCATGTACGA GAAGCTCTCG
GGCATGACCG GCACCGCCGA CACCGAAGCT TTCGAATTCC AGAGCATCTA CGGCCTCGAA
ACCGTCGTCA TCCCGACCCA TCGGCCGATG ATCCGCAAGG ACGAGCACGA TCAGGTCTAC
CGGACCGGGC GCGAGCGCGA TCAGGCCGTC ATCAACGACG TGCGCGCCTG CCACGAGCGC
GGCCAGCCGG TGCTCGTCGG CACGACGTCG ATCGAGGCCA ACGAGAAGCT GTCGGCCGAA
CTCAAGAAGG CCGGGCTCCC GCACAACGTG CTCAACGCCA AGCAGCACGC GAGCGAGGCC
GAGGTGATCG CCCAAGCCGG CCTGCCCGGC GCGGTCACGA TCGCCACCAA CATGGCCGGC
CGCGGCACCG ACATCGTGCT CGGCGGCAGC ATCCAGAAGG AGGTCGACGC GATCCGCAAC
GACGCGGCGC TCGCCGACGG CGAGAAGGAC GCGCGCATCA CCGCGCTCAA GGCCGACTGG
CAGACGCGCC ACGATGCCGT GCTCGCCGCC GGCGGCCTGC ACATCATCGG CACCGAGCGC
CATGAGTCGC GGCGCGTCGA CAATCAGCTG CGGGGCCGCT CGGGCCGCCA GGGCGACCCG
GGTTCCTCGC GCTTCTTCCT CTCGCTCGAG GATCCGCTGC TGCGCATCTT CGCGTCGGAC
CGCGTCGCCG CGATCATGAA CCGCCTGAAG ATGCCGGAGG GCGAGGCGAT CGAGCATCCC
TGGGTGACGC GCGCGATCGA GAATGCGCAA CGCAAGGTCG AACAGCGCAA CTTCGATATC
CGCAAGCAGC TGCTTGAATA CGACGACGTC TCGAACGACC AGCGTAAGGT CATCTACGAG
CAGCGCAACG AACTCCTCGC GAGCGTCGAA ATCGGCGACA CGATCCGCGC CATGCGCTAC
GACGTGCTCG GCGAGACGAT CGACCAGCAC ATCGCGCCCG GCAGCATGGA CGAGCAGTGG
GACGTCGCCG GACTCGAGAA GACGCTCGCG GCCCAGTTCA CGCTCGAGCT GCCGCTGCGG
CAGTGGCTCG ACGAGGACAA GACGCTCAAC GAGGAGGGGC TGCGCAAGAA GATTCTCGCC
GCGGCCGACG CGGCCTATGC GGAAAAGGAA GCGCTCGTCG GCGCGGAAGG GCTGCGCCGC
TTCGAGCGCG CGGTGATGCT GCAAAGCCTC GACACCCACT GGCGCGAGCA TCTTTCGGCG
CTCGACCATC TGCGCCAGGG CATCCACCTG CGTGGCTATG CGCAGAAGCA GCCCAAACAG
GAATACAAAC GCGAGGCCTT CGAGCTGTTC TCGGCGATGC TCGCCGCCAT CAAGGCCGAG
GTCACCCAGA TCACGACCAC GGTGCAGGTC CGGGCACCCG AGGACGTGCA AGCGGTCGAA
CTCCACGAGG AACCGTCCAA CGTGCAGTAC GAGCATGCCG GCTACGACGA AGGCGCAGAT
TTCGCCGCGG CCGAATCGGC CGAAGCGGCA CCTTCGGGCC CCGTCCATGT CGGACCCAAG
GTCGGCCGCA ACGACCCCTG TCCGTGCGGG TCGGGCAAGA AGTACAAGCA GTGCCACGGC
AAACTGGCCT GA
|
|---|
| Protein sequence | MLRFSGFPRP AGISDSLMLQ SLFKKVFGSR NERLVKQYLQ KVKAINALEP AMEQLSDAEL
AGKTADFKAR IEQGTSLDTL LPEAFAVVRE AARRVLGLRH YDVQMVGGMV LHDGKIAEMR
TGEGKTLMAT LPAYLNALAG KGVHVVTVND YLARRDAEWM GRVYGFLGLT TGVNLSHMPH
AEKQAAYAAD ITYGTNNEYG FDYLRDNMVF EVGEKVQRPL AFGVIDEVDS ILIDEARTPL
IISGQSEENT ALYQQVNLVP PRLTRQKDEE SEGDYSVDEK SRQVLLSEAG HEKVEEILTE
MGLLQPGGSL YDASNIMLMH HVYAALRAHA LFFKDQHYVV QNGEVVIVDE FTGRLMSGRR
WSEGLHQAVE AKEGVAIQKE NQTLASITFQ NFFRMYEKLS GMTGTADTEA FEFQSIYGLE
TVVIPTHRPM IRKDEHDQVY RTGRERDQAV INDVRACHER GQPVLVGTTS IEANEKLSAE
LKKAGLPHNV LNAKQHASEA EVIAQAGLPG AVTIATNMAG RGTDIVLGGS IQKEVDAIRN
DAALADGEKD ARITALKADW QTRHDAVLAA GGLHIIGTER HESRRVDNQL RGRSGRQGDP
GSSRFFLSLE DPLLRIFASD RVAAIMNRLK MPEGEAIEHP WVTRAIENAQ RKVEQRNFDI
RKQLLEYDDV SNDQRKVIYE QRNELLASVE IGDTIRAMRY DVLGETIDQH IAPGSMDEQW
DVAGLEKTLA AQFTLELPLR QWLDEDKTLN EEGLRKKILA AADAAYAEKE ALVGAEGLRR
FERAVMLQSL DTHWREHLSA LDHLRQGIHL RGYAQKQPKQ EYKREAFELF SAMLAAIKAE
VTQITTTVQV RAPEDVQAVE LHEEPSNVQY EHAGYDEGAD FAAAESAEAA PSGPVHVGPK
VGRNDPCPCG SGKKYKQCHG KLA
|
|---|
| |