| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0115 |
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| Symbol | |
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| ID | 3673894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 122241 |
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| End bp | 123635 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637708775 |
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| Product | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase |
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| Protein accession | YP_313873 |
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| Protein GI | 74316133 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0448444 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0314299 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGG GGAACTGCAT GATGCGTCTG TCGGAGGCCG CGGCCATGCT CGGCGTGCCG
CTGCCCGGCG CCGACGCCGA AGTCGTGCGG GTCACGACCG ACAGCCGTAC GCTGCGTCCC
GGCGACCTCT TCGTCGCACT GCGCGGCGAG CGCTTCGACG GCGGCGCTTT CGCGGCGCAG
GCCCTGCAGC AGGGCGCGGC CGGCGTGGTC CTCGACCGGG CGCAGGCGCC CGACCTCGCG
CAGGCGCTGC GCGTCGACGA TACCCGGCTC GCACTCGGCC GGCTGGCGCA GGCGTGGCGG
CAGCGTTTTG CGATTCCGCT CGTCGCGATC ACCGGCAGCA ACGGCAAGAC GACCGTGAAG
GAAATGCTCG CGGCGATCCT GCGCGTCGAA GCGGGCGACG CCGCGGCCGT ACTGCACACC
GAGGGCAATC TCAACAACGA TATCGGCGTA CCGCTGATGC TGCTGCGCCT GCGCGACCAC
CATCAGTACG CCGTGCTCGA AATGGGCATG AACCACGCCG GCGAGATCGA CTACCTCACG
CGTCTTGCGC GACCCGACAT CGCGATCGTC AACAACGCGC TTACTGCGCA TATCGGGTTT
CTCGGTTCGG TGGAAAACAT CGCGCGCGCC AAGGGCGAGA TTTTCAACGG CCTCACCGAC
GCGGGAATCG CCGTGTTCAA CGCCGACGAT CCGCATGCCG GACTTTGGCG CGAGGCGAAT
CGCCAGCGCT GCGTCGTCGA TTTCGGCCTC GTGCACGCGA CCAGCGTCCG CGGTGACTAC
CGTGCCGACG AATTCGGCTC GGCGCTCACG GTCACGCTGC CGAACGCCAC GCTCGACATC
GCGCTCCAGG TTCCGGGCGA GCACAACGTC ATGAACGCGC TCGCGGCGGT CGCCGGCGCG
TTCGCCCTCG ACGTCTCGCA TCGCAGTGTC GTCGCCGGGC TCGCGGGCTT CGGTGGCGTC
AAGGGCCGGC TGCAGCGCAA AGCCGCGCTG CACGGCAGCA CCGTGATCGA CGACACCTAT
AACGCCAACC CGGACTCGGT CAAGGCCGCG CTGGCCGTGC TCGCGCAGCA GCCGGGCAAA
AAAATATTCG TGCTCGGCGA CATGGGCGAA CTCGGCGACG ACGCCGCGTC CATGCATGAG
GAGATCGGCG TCGCCGCGCG GGCGGCCGGC GTCGGCCGGT TGCTCGCGCT CGGCGACCTG
AGTTGCGCGA CGGTCGCGGC GTTCGGCACG GGCGCGATGC ATTTCGAGCG GATCGAGGAA
CTCCTCGCCG AACTCGAAAA CGAATTAGCG CCCGGCACGG TTGTGCTGGT AAAGGGGTCG
CGCTTCATGC AGATGGAGCG CGTGGTCAAG AGTTTCACGG AAGCGTCCGA CGCGCCGGGG
ATGCAGGAAC ACTGA
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| Protein sequence | MSEGNCMMRL SEAAAMLGVP LPGADAEVVR VTTDSRTLRP GDLFVALRGE RFDGGAFAAQ
ALQQGAAGVV LDRAQAPDLA QALRVDDTRL ALGRLAQAWR QRFAIPLVAI TGSNGKTTVK
EMLAAILRVE AGDAAAVLHT EGNLNNDIGV PLMLLRLRDH HQYAVLEMGM NHAGEIDYLT
RLARPDIAIV NNALTAHIGF LGSVENIARA KGEIFNGLTD AGIAVFNADD PHAGLWREAN
RQRCVVDFGL VHATSVRGDY RADEFGSALT VTLPNATLDI ALQVPGEHNV MNALAAVAGA
FALDVSHRSV VAGLAGFGGV KGRLQRKAAL HGSTVIDDTY NANPDSVKAA LAVLAQQPGK
KIFVLGDMGE LGDDAASMHE EIGVAARAAG VGRLLALGDL SCATVAAFGT GAMHFERIEE
LLAELENELA PGTVVLVKGS RFMQMERVVK SFTEASDAPG MQEH
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