| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0114 |
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| Symbol | |
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| ID | 3673893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 120724 |
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| End bp | 122244 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637708774 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
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| Protein accession | YP_313872 |
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| Protein GI | 74316132 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
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| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.11052 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0671114 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGTGC GCGACTCTCA CAACCCGCTT GCCGCGAGCG CGTCGATGTC GATCCGCGAA
TCGGTGCCGC ACATCCTCGA ACGGCTCGGT CTGGCACCGG GCGAGCTCGT CAACGACAGC
CGGCGCGCCG CGCCGGGCAA GGTGTTCGTT GCCTACCCGG GCGACGCCCG CGACGGCCGC
GACTTCATCC CGCAGGCGGT GGCCCAGGGC GCCGACGGTG TGCTGTGGGA GGCCGATCAC
TATCAGTGGG ATCCCGCGCT CGCGATCCCG AACGCCGGCG TCGCCGGACT CAAGACCCGC
ATCGGCGAAA TCGCGGCACA CGTCTACGGC GAGCCGTCGC GGGCGCTGCA CATGATCGGC
GTCACCGGCA CCAACGGCAA AACCTCGGTC GCGCACTGGA TCGCGCAGGC GCTGTCGGCG
CTCGGCCGCA AGACCGCGAT CATCGGCACC GTCGGCAACG GCTTCCCGTC CACGGGCGAC
ACGCCCGCTG CGCTCACACC GGCGCTCAAC ACGACGCCAG ACGCGATCGA GCTCCAGCAG
CGCCTCGCGC GCTACCGCGG CGAGGGCGCG GTCGCCTGTG CCATGGAAGT CTCGTCGCAC
GGCCTCGCGC AGGGCCGCGT CAACGGGTGC CGCTTCAAGG TCGCAGTGCT GACCAACCTG
TCGCGTGACC ATCTCGACTA CCACGGCGAC ATGGACAGCT ACGCCGCTGC GAAGGCGCGT
CTCTTCAACT GGCCCGATCT CGAGTGGGCG GTGCTGAACG TCGACGACGC GTTCGGGCAG
CGCCTCGAGG GCGAGACGCG GCCGGCGCGT GTTGCCGGCT ACGGTTTCCA GCGCGGCGCC
GTCGTCGCGC GCGGTCTCCA GTTGTCGCAG GCAGGCATGC ATCTGGCGTT GCAGACCGAC
TGGGGCGACG CCGAGATCGA CGCGCCGCTG CTCGGCCGCT TCAACGCCGC GAACCTGCTC
GCCGCGCTGA CCGCGCTGCT GGTCTCCGAC GTGAAGCTCG ACGACGCGTG TCGCGCGCTC
GCGCAGGTCA CGCCCCCTGC CGGGCGCATG CAGACGCTGG GCGGCGAGGC GCATCCGCTG
GTCGTGGTCG ACTACTCGCA TACGCCGGAC GCGCTCGAGA AAGTGCTCGC GACGCTGCGA
GAAATCGCGG GCGGGGGCCG GCTGATCTGC GTATTCGGCT GCGGCGGCAA TCGCGACAAG
GGCAAGCGCC CCCTGATGGG CGCAGCGGCT GGCCGTGGCG CTGACGAGAT ATGGGTCACG
AGCGACAACC CGCGCCACGA GGATCCGCGC GCCATCATCG ACGACATCCG CGCGGGGCTT
GCCGAGGCCG AGGCGGAGGG TCGGGTGCGC GTCGAGGCCG AGCGCGCCCG CGCGATATTC
GAGGCGGTCG GCGGCGCGCA TCACGGCGAC GTCGTGCTGA TCGCAGGCAA GGGCCACGAG
GACTATCAGG AAGTCGCGGG CGAACGTCTG CCGTTTTCGG ATATTGCAAT GGCGAGAAAG
GCGCTGGAGG CTTGGGCATG A
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| Protein sequence | MAVRDSHNPL AASASMSIRE SVPHILERLG LAPGELVNDS RRAAPGKVFV AYPGDARDGR
DFIPQAVAQG ADGVLWEADH YQWDPALAIP NAGVAGLKTR IGEIAAHVYG EPSRALHMIG
VTGTNGKTSV AHWIAQALSA LGRKTAIIGT VGNGFPSTGD TPAALTPALN TTPDAIELQQ
RLARYRGEGA VACAMEVSSH GLAQGRVNGC RFKVAVLTNL SRDHLDYHGD MDSYAAAKAR
LFNWPDLEWA VLNVDDAFGQ RLEGETRPAR VAGYGFQRGA VVARGLQLSQ AGMHLALQTD
WGDAEIDAPL LGRFNAANLL AALTALLVSD VKLDDACRAL AQVTPPAGRM QTLGGEAHPL
VVVDYSHTPD ALEKVLATLR EIAGGGRLIC VFGCGGNRDK GKRPLMGAAA GRGADEIWVT
SDNPRHEDPR AIIDDIRAGL AEAEAEGRVR VEAERARAIF EAVGGAHHGD VVLIAGKGHE
DYQEVAGERL PFSDIAMARK ALEAWA
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