| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0016 |
|---|
| Symbol | |
|---|
| ID | 3673851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 15974 |
|---|
| End bp | 17230 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637708675 |
|---|
| Product | Fmu, rRNA SAM-dependent methyltransferase |
|---|
| Protein accession | YP_313774 |
|---|
| Protein GI | 74316034 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.398476 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.248834 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAGC TGCAAAAGAT CGCCGCCGAC GCGCTCGAGG ATGTCCTCGC GGGCGCAGCC
TTGCACCAGG TGTTGCCCGC CGGGCAGCGT CTGCTCACGA CGCCCGGCGA GCGCGGCGCG
CTGCAGGACC TCGTCTACGG CAGCCTGCGC CAGCTGGGCC GCATCGACGC CTGGCTCGAC
GCGCTGCTCG AGCGCCCGCT GACCGATCCG CACCTCGAGT CGCTGTTGCG GATCGCGCTC
TACCAGATGG CCTACACCCG GGCCCCCGCG CACGCGATCG TGCACAACGC CGTCAGCGCG
GCCGGCGGCG GCTGGCGGCG CGGTCTCGCC AACGCGGTGC TGCGCAATTT CCAGCGCCGC
CGCGCCGAAC TCGACGCCCT TGCCGAGGCG AAACCGGGCG CGCGCTGGTC ACATCCCGAG
TGGTGGATCG AGAAGCTGCG CGCCGCGTAT CCCGAGCGCT GGCAGGCGAT TCTCGCCGCG
AGCCTGCTGC ATCCGCCGTT TACCCTCAGG GTCAGCAGCC GGCACGGCGA CGTCGCGAGC
TATCTCGCCG AGCTCAATGA GGCCGGCCTG CCCGCGCACC GGAGCGGCCA ACAGGCGGTC
ACGCTCGAGA AGGCCGTCCC GGTCCAGCTG CTGCCGGGAT TTGCCGAAGG CCGGGTATCG
GTTCAGGACG CAGGCGCGCA GCACGCCGCG CGCCTGCTCG GCGCCAAGCC GGGCGAACGC
GTGCTCGACG CCTGCGCCGC GCCGGGAGGC AAGACTGGCC ACATTCTCGA GCTGGCCGAC
GTCGACCTCG TCGCACTCGA CGTCGACGCG GCCCGGCTCG CGCGCGTGCA GGAGAACCTC
GACCGCCTGC GTCTGCACGC GACCCTGGTC GAGGGCGATG CCGCGCGGCC CGAGGCATGG
TGGGACGGCC GCCCGTTCGA CCGCATCCTG GCCGACGTGC CGTGCAGCGC CTCGGGCGTC
GTGCGCCGCA ACCCCGACAT CAAGTGGCTG CGCCGACCGG GCGACATCGC TCAATTTGCC
GCGCAGCAGG CCGTAATAGT GGAGGCGCTT TGGCGCCTGC TGCGCCCGGG TGGTACATTG
CTTTACGCCA CCTGCTCGAT ATTTCACGAA GAAAACGAGG GCCAGGTGCA GGCCTTCCTG
GCGCGCCACG TCCAGGATGC CGAACGCTGT TCGCTCCCTG AACCTTTGTC CGACGGGTCG
CTACTGCCTG ATGCCGAGCA TGATGGTTTC TTCTACGCCC TGCTGCGCAA GATTTGA
|
|---|
| Protein sequence | MRKLQKIAAD ALEDVLAGAA LHQVLPAGQR LLTTPGERGA LQDLVYGSLR QLGRIDAWLD
ALLERPLTDP HLESLLRIAL YQMAYTRAPA HAIVHNAVSA AGGGWRRGLA NAVLRNFQRR
RAELDALAEA KPGARWSHPE WWIEKLRAAY PERWQAILAA SLLHPPFTLR VSSRHGDVAS
YLAELNEAGL PAHRSGQQAV TLEKAVPVQL LPGFAEGRVS VQDAGAQHAA RLLGAKPGER
VLDACAAPGG KTGHILELAD VDLVALDVDA ARLARVQENL DRLRLHATLV EGDAARPEAW
WDGRPFDRIL ADVPCSASGV VRRNPDIKWL RRPGDIAQFA AQQAVIVEAL WRLLRPGGTL
LYATCSIFHE ENEGQVQAFL ARHVQDAERC SLPEPLSDGS LLPDAEHDGF FYALLRKI
|
|---|
| |