Gene Tbd_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0002 
Symbol 
ID3673837 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1689 
End bp2792 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content65% 
IMG OID637708661 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_313760 
Protein GI74316020 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.870835 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTATTAA TACAAAGCGA ACGCAATGCC TTGTTGAGCG CCCTCTCGGC AGTCGTCGGG 
GTCGTCGAGA GAAGGCACAC CCTGCCGATC CTGTCCAATC TTCTGCTCGA GAAGAAAGCC
GGCACGCTGA CCCTGCTCGC GACCGACCTC GAGCTCCAGG TCAGCACCCG GCTCGAGGCC
CAGGGCGGTG ACGACTTCGC GATCACGATC GCGGCGCGCA AGCTCTTCGA CATCGTCCGC
GCCCTGCCCG ATTCGGCGTC GGTCAAGCTC GATACCAAGG ACAGCCAGGT CGTCGTCAGC
GCGGGCAAGT CGCGCTTCAC GCTGCAGACG CTGCCTGCGG CCGACTTCCC GCGCGTCGAG
ACCGGCGCCG GGGTCGGCAC GGTCGTCCGC CTCCCGCAGA AAACCCTGAA GCGCCTGCTC
CAGCTCGTGC AGTTCGCGAT GGCGAGCCAG GACATCCGCT ACTACCTGAA CGGCATGCTG
CTCGTCCTCG ACGGCCAGCA GCTGCGCGTC GTCGCGACCG ACGGCCACCG CCTGAGCTAC
GCCGAGACCA CGCTCGACGC GCCCACCGAC GCGCAGGAAG TCATCATCCC GCGCAAGACC
GTCATCGAAT TGTCCAAGCT CCTGAGCGAC AGCGACGAGC CGGTCGAACT GCGCATCGGC
AGCAACCAGG TGACGATCAT GCTGCCCGGA ACCGAGCTCG TGACCAAGGT CGTCGACGGC
AAATTCCCCG ACTACCAGCG CGTCATCCCG GCAAATCAGC CGCGCCACCT CAAGGCCAAC
CGGCAGACCG TCGTGCAGGC GCTGCAGCGC GCGGCGATCC TGTCGAACGA GAAATTCCGC
GGCGTGCGCC TGGTGATGAG CGACAACACG CTCGGCATCG TCTGCAACAA CAACGAGCAG
GAAGAAGCGG CCGACGAAAT CGAGGTCAGC TACAACGGCG ATCCGCTCGA CGTCGGCTTC
AACGTCACCT ACCTGCTCGA CGGCCTCGGT GCCGTCAACA CCGACGAGAT CACGCTGTCG
CTCGGCGACG CCAACAGCAG CATGCTGCTC ACGAGCGAAG GGGAGCCGGG GTTCAAATAC
GTCGTGATGC CGATGCGCAT CTGA
 
Protein sequence
MLLIQSERNA LLSALSAVVG VVERRHTLPI LSNLLLEKKA GTLTLLATDL ELQVSTRLEA 
QGGDDFAITI AARKLFDIVR ALPDSASVKL DTKDSQVVVS AGKSRFTLQT LPAADFPRVE
TGAGVGTVVR LPQKTLKRLL QLVQFAMASQ DIRYYLNGML LVLDGQQLRV VATDGHRLSY
AETTLDAPTD AQEVIIPRKT VIELSKLLSD SDEPVELRIG SNQVTIMLPG TELVTKVVDG
KFPDYQRVIP ANQPRHLKAN RQTVVQALQR AAILSNEKFR GVRLVMSDNT LGIVCNNNEQ
EEAADEIEVS YNGDPLDVGF NVTYLLDGLG AVNTDEITLS LGDANSSMLL TSEGEPGFKY
VVMPMRI