| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3692 |
|---|
| Symbol | |
|---|
| ID | 3624636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 4752883 |
|---|
| End bp | 4755525 |
|---|
| Gene Length | 2643 bp |
|---|
| Protein Length | 880 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637702524 |
|---|
| Product | DNA-directed RNA polymerase subunit A' |
|---|
| Protein accession | YP_307135 |
|---|
| Protein GI | 73671120 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02390] DNA-directed RNA polymerase subunit A' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.127113 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATG TACCTCCAAT TCCGAAAAGA ATTTCTTCTA TTAAATTCGG CTTACTGTCT
CCAAAAGAGA TCCGTAAAAT GAGTTCAACT CCGATCATCA CAGCCGACAC TTACGACGAT
GACGGATTTC CAATTGACAT GGGGCTTATG GACACGAGGC TCGGAGTTAT TGACCCAGGG
CTTCGCTGCA AGACATGTTC AGGGCGAGCA GGTGAATGTC CTGGACACTT CGGGCACATC
GAACTTGTCG CCCCGGTAGT CCATGTTGGT TTCAATAAAG TAATCCGAAA ACTTCTCAGG
GCTACCTGCA GGAAATGCAG CAGGCTACTG CTTGACCCTG CACAGAAACA GCATTTTCTG
GACCAGCTTA TAGGCATTGA GGAAATCGGA CATATGCCCG ATGACCTGAT TAATGAGGCT
TATAAGGAGG CCAGCAAAGT AAAGACCTGC CCTTACTGCA ATGAGGAACA GCTGGAAATT
AAATTCGAAA AACCCACTGA ATATCTCGAA AATGGGGAGA AGCTGACTCC TACCGAGATA
AGGGACCGTT TTGAGAATAT CCCTGACGAC GACATCCGGG TTATCGGGAT GGACCCAAAG
AATGCAAGGC CTGAATGGAT GATACTTACA GTTCTGCCTG TACCACCTGT TACAGTTCGT
CCTTCGATTA CCCTTGAGTC CGGGCAGCGT AGTGAAGACG ACTTGACCCA CAAACTCGTA
GATATTATCA GAATTAACCA GCGCTTCCAG GAAAACAGGG AAGCTGGTGC TCCTCAGCTC
ATTATTGAGG ACCTCTGGGA ACTCCTTCAG TATCACGTTA CAACCTTCTT TGACAATTCT
GTCTCAGGGA TACCTCCTGC AAGGCACAGG TCAGGCAGAC CCTTAAAAAC CCTTTCCCAG
CGTTTAAAGG GCAAGGAAGG ACGTTTCAGA GGAAGTCTCT CGGGTAAACG TGTTAACTTC
TCGGCTCGTA CGGTAATTTC TCCGGATCCA AACTTGAGTA TTAATGAAGT AGGGGTTCCT
ATGCCCATTG CACGGATCCT TACAATGCCC TCGGTGGTAA CACCAAGGAA TATAGAGCAG
CTCAAAATTT ACGTGCGCAA TGGGGAGGAT ATACACCCAG GAGCGAACTA CGTACTGCGT
CCTGACGGCA GGCGTATAAA AGTTACCAAT GTAAACAAAG ATGACCTTGC CGAAAAACTG
GAGTTCGGAT GGACAGTTGA ACGCCAGTTA AAAGATGGAG ATATTGTACT CTTTAACAGA
CAGCCGTCTC TGCACAAGAT GAGTATTATG GCTCATTCTG TGAAGGTGCT TCCGAATAAG
ACTTTCAGGC TGAATCCTGC TGTATGCCCT CCATATAACG CTGACTTTGA TGGGGATGAG
ATGAACATGC ACGCCCTTCA GACCGAAGAG TCCAGGGCTG AGGCAAAGAT CTTGATGCAG
GTTCAGGAAA ACATTCTTTC TCCACGTTTC GGCGGTCCTA TTATAGGTGG GATCCATGAC
CATATTTCAG GACTTTTCCT GCTGACACGT TTTGAGAACC ACATCTACGC CGATGACGCT
TATGATATGC TCCGGAAGAG CAATATCCGA GAGCTGCCTT CCCCTGCAGG ATACGATCCC
GATGGAAAGC CCTACTGGAC AGGAAAGCAA ATCTTCAGCC AGATCTTGCC TAAAAACCTT
AATACACAGT TTGCAGCCCA GGTCTGCTCG CACTGTGACA TCTGCAAGAA AGAGGAGTGC
CCGAACGATG CCTATGTGGT AATCCGGGAC GGAGAGCTCA TTAAAGGAAC GATAGACGAG
GCCGCCATCG GAGCATTCAA AGGAAAAGTT CAGGACCGTA TTATCAAGGA AATAGGCCCT
GAAGTCGGAG CTCGCTTTAT AGATAATATG ACCATGCTTG CAGTTAGGGC TATTATGCGG
ACAGGCTTGA GCTTCGGAAT TGCTGATGAA GATATTCCGA AAGAAGCCAG GATCCAGATC
AATGAAGTCC TCGGCAAAGC TGAAGATGCT GTGCAGAACC TCATCAAGTC TTATCAGAAT
AAGGAGCTTG AACCTCTTCC TGGAAGAACC CTCGATGAGA CAATCGAAAT GAGCATCATG
CAAAAGCTTG GAAAGGCCAG AGACGAGACA GGTAACATAG CAGACAGCCA TATAGGGCTT
GAAAACTCGG CAGTTATCAT GGCCCGTTCT GGGGCAAGAG GTTCCATCCT GAACCTTACT
CAGATGGCAG CCTGTGTTGG TCAGCAGGCC GTGCGTGGAG AACGTATCCG CAGAGGATAT
GCAGGCAGGA CATTACCCCA TTTCCAGAAG GGAGACCTTG GTTCGGACGC TCACGGGTTC
GTAAAGGCAA GCTACAAGAG CGGACTTAAT CCAACTGAAT ATTTCTTCCA TGCAATCGGT
GGTAGGGAAG GTCTTGTGGA CACTGCGGTC AGGACATCAC AATCAGGGTA CCTGCAGAGA
AGGCTTGTCA ATGCGCTCCA GGACCTGGAA GTTCAGTACG ACCTCACGGT CAGGGATACC
AGAGGTGTGC TCGTGCAGTT TAAATTCGGA GAAGATGGGA TTAACCCCAC AAAAAGCGAT
TTCAGCAAAC CCGATACAAT CCATAGGATT GTCCGTTCTG TAGCAAACCG GGAGGTGGCC
TGA
|
|---|
| Protein sequence | MANVPPIPKR ISSIKFGLLS PKEIRKMSST PIITADTYDD DGFPIDMGLM DTRLGVIDPG
LRCKTCSGRA GECPGHFGHI ELVAPVVHVG FNKVIRKLLR ATCRKCSRLL LDPAQKQHFL
DQLIGIEEIG HMPDDLINEA YKEASKVKTC PYCNEEQLEI KFEKPTEYLE NGEKLTPTEI
RDRFENIPDD DIRVIGMDPK NARPEWMILT VLPVPPVTVR PSITLESGQR SEDDLTHKLV
DIIRINQRFQ ENREAGAPQL IIEDLWELLQ YHVTTFFDNS VSGIPPARHR SGRPLKTLSQ
RLKGKEGRFR GSLSGKRVNF SARTVISPDP NLSINEVGVP MPIARILTMP SVVTPRNIEQ
LKIYVRNGED IHPGANYVLR PDGRRIKVTN VNKDDLAEKL EFGWTVERQL KDGDIVLFNR
QPSLHKMSIM AHSVKVLPNK TFRLNPAVCP PYNADFDGDE MNMHALQTEE SRAEAKILMQ
VQENILSPRF GGPIIGGIHD HISGLFLLTR FENHIYADDA YDMLRKSNIR ELPSPAGYDP
DGKPYWTGKQ IFSQILPKNL NTQFAAQVCS HCDICKKEEC PNDAYVVIRD GELIKGTIDE
AAIGAFKGKV QDRIIKEIGP EVGARFIDNM TMLAVRAIMR TGLSFGIADE DIPKEARIQI
NEVLGKAEDA VQNLIKSYQN KELEPLPGRT LDETIEMSIM QKLGKARDET GNIADSHIGL
ENSAVIMARS GARGSILNLT QMAACVGQQA VRGERIRRGY AGRTLPHFQK GDLGSDAHGF
VKASYKSGLN PTEYFFHAIG GREGLVDTAV RTSQSGYLQR RLVNALQDLE VQYDLTVRDT
RGVLVQFKFG EDGINPTKSD FSKPDTIHRI VRSVANREVA
|
|---|
| |