Gene Mbar_A3560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A3560 
Symbol 
ID3626489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp4568108 
End bp4568971 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content45% 
IMG OID637702392 
ProductMerR family transcriptional regulator 
Protein accessionYP_307009 
Protein GI73670994 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0789] Predicted transcriptional regulators
[COG4978] Transcriptional regulator, effector-binding domain/component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.453881 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGCAAGA TGTCAGTAGA TCAAATTCCA ATCGGTAAGT TTTCTTTCAT GACTCGCCTC 
TCACAAAAAG CACTCCGTCT CTATGACCGG AAAGGGCTGC TTGTTCCGGA AGCAAAGGAC
CCTTTTACGG GATACAGGTA CTATACCGTT TCCCAGCTGG AACAGGGAAT GAAAATTAAA
ACTCTATGCT TCCTCGGATT TTCCTTGGAA GAAATTTCCC TGTTTCTGGA TGCGGAAAGC
AAAGGAGACT TCGAGTACAT AGGAACAGGC TTCAGGAAGA GACTTGAGCA AACTCGACTG
GAAATAGGAC AGCTGCAAAG GATCGAAGGG ATCTTGCAGG GCGCCTGCAA ACACAATGGA
AAAGTTATGG AGTTATTCAA AATGTCTATT ACAGAACCCG TTATAAAGGA AATACCCGAG
ATGCGAGTAA TAAGCAAGCG TGAAAAAGGA ACTTTTGTGG CAACTATTGG AAAACTTATA
GGTGAAATCT GCACAAGTGT CGGCAGCCCT GAAAACCAGC GAAACCGTGT AAAAGTTACA
GGTCCTGTTA TGTTCCTCTG CCATGATGAA GAATACAAAG AAATAGGGGC TGATATCGAG
ATCGCCCTGC CTGTATCTGG CAGGATCTCA GTCGAAGACC CGAAAATGGA AGTGAAAACA
CTGCCTGCTA TAAGAGCTAT CTCAGTGGTC TACCGGGGCC CGTATCCGGG AGTCGAAGCT
GGTTACAACC AGATTTTCTC GTATGCCAGA GAGAATAACC TGGAAACCTT GAGCCCTGAC
AGAGAATTGT ATTTCAATAG CCCTGAAGAA GTTCCTGAAG AAGAGCTTAT GACTGAAATT
CAGGTCCCGA TAAGGGAGAA GTAA
 
Protein sequence
MSKMSVDQIP IGKFSFMTRL SQKALRLYDR KGLLVPEAKD PFTGYRYYTV SQLEQGMKIK 
TLCFLGFSLE EISLFLDAES KGDFEYIGTG FRKRLEQTRL EIGQLQRIEG ILQGACKHNG
KVMELFKMSI TEPVIKEIPE MRVISKREKG TFVATIGKLI GEICTSVGSP ENQRNRVKVT
GPVMFLCHDE EYKEIGADIE IALPVSGRIS VEDPKMEVKT LPAIRAISVV YRGPYPGVEA
GYNQIFSYAR ENNLETLSPD RELYFNSPEE VPEEELMTEI QVPIREK