| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3538 |
|---|
| Symbol | |
|---|
| ID | 3627560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 4538238 |
|---|
| End bp | 4540502 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637702364 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_306987 |
|---|
| Protein GI | 73670972 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0655709 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.940328 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCCTA AAAATACTAA CGATCAGGAG CCCATATCCT ATCAGGCACT AATGGATGAA
AACCGTGCCT TAAAAGATAA AATCCAGAGC CTGAGAGCAC ACCTAGAGGA AGCTGAAGAA
CTTGAGTGCT CTATAATCAG CAAAGTGGGT CCGGAGCGCG AGTTGAGTAA GACTTTCCGT
GAGTCACTTA ACTCCATCAA TCTGACAATT CATTCAATCC TTGATTTCGA CGAGATTATG
AAAAAAATTG TTTCAGAAGC AGCCAGGGCA ATTGGGAGTG AGACTGCCGC TATTTTTCTT
AAAAAGGGCA CCCGTTGGGT TCTCAGCTAT TCACATGGTT TTCCAGAAGA TATGATTGGA
TTGGGAATGA ATGACGAGGA AGAACCTCAT ATTGCACTTG CAACTAAAAC TAAAAAACCG
GTCGCTATTA ACGATGCCTT TAATGATGAA AGGGTAAATC GCGATTATAT GAGGAAATGG
AACGTTCGTT CCGCACTGGT TGTACCTCTT ATAACCAGAG ATGAAGTTAT CGGTGTGATC
TTTTTCAACT TTCACAAATC TACTTTTGCA TTTAGTGACG TCCATATTAG TTTTGGGACG
CAGCTTGCGT CATCTATATC ACTAACCTTG GAAAATTTCC GCCTGATTGA GAATCTTAAA
ATAGAACTTG TCAAACACAA GCAAGCTGAG GAGGCATTAC GCGAAAGTGA GGCAAAGTAT
CGGCAGATTG TGGAAACCTC TCAGGAGGGT ATATGGTTAA CTGATAACAG CAATCGAACA
GTTTTTGTCA ACCAGAAAGT CTCTGAAATG CTGGGCTATA GTATAGAAGA GATCCTGGGA
CGGTCGCCTC AAAAGTTCAT ATCCCCTGAG TTTAGCACAG GGATGGAGGA TAGACTGCGC
GAGTATATGC CGGAAGTTAA CCGCTTGGAA GTTAACCGCT TGGAAGTTAA CCGCTTGGAA
GTTAACCGCT TAATTGACTA TCGGTTCACC CGAAAAGATG GATCAGATCT ATGGTGCATT
CTTTCCTTCA GTCCATTATT CGATGATCAA GGAAAATACG CAGGGTCATT GATCATGATT
ATGGACATTA CCGACTGCAA GCGAACTGAA AAAGCCCTTA AAAAAGCCTA CAATAGTTTA
GAAGAAAAAA TAAAAGAACG CACAGCAGAG CTGAAAATTG CTTACAGTTC ATTAAAAGAA
AATGAACGAA GTCTTGCTGA AGCTCAAGAG CTTGCTCATA TTGGAAATTG GTGTCGCAAT
ATTGAAACCG GGGAAGTACG CTGGTCTGAT GAAGTTTATC GTATTTTTGG ATTTAAGCCT
CAAGAATTTG GCGTCACCTA CGATATGTTT TTGAGCCGTG TACATCCAGA TGAGCGTGAG
TATTTAGTTG AAGTAGTCAA ACAAGCTTTA GATAAAAAGT TCTTTGACGC TGAATATAGA
ATAATCCGAC CTGATGGAGT AGAGCGTATA CTGCACGAGG ATATCAAAGT TATTTGTGAC
AATGAGAATA CTCCAATTCG ACTGAATGGG ACAGTTCAGG ATATTACTGA ACGTAAAAAA
GCAGAAGAAG CTCTGATAAA ACTCGAAAAG ACCCGGATAA AGGAAATTCA TCATAGAATC
AAAAATAACT TACAGGTAAT CTCTTCCCTG CTGGACCTCC AGGCTGATAA GTTCAAAGAT
GAATCGGTTA GAAAAGCTTT CAGTGAAAGC CAGAACCGTG TATTTTCAAT GTCTCTTATC
CATGAAGAAC TCTATAAAGG GGATGAAGCC TGTTCACTGG ACTTTTCTTC CTATCTAGAA
AAGTTAGCTG AAAATCTATT CAGGACTTAC AGCACTAGCG GCAAAAGTAT CCACCTGAAT
ACGGATCTGG AAGAAAACAC ATTTCTTGAC ATGGATACTG CTGTCCCATT GGGCATAATA
GTTAATGAAC TCATTTCTAA CTCCTTAAAG CATGCATTTA CTGAAAAAAA AGAAGGAGAA
ATTCAAGTCC GTTTTTTCAG GGATAAAGAA AAGTGTAACG AAATGCACAG TTTAATATTC
AGCCTGATAA TTTCGGATAA CGGAATAGGA ATTCCTGAAG ACCTGGATTT AGAAAATATC
AAGTCGCTTG GCCTGCAATT AGTAAATATC CTTGTAGACC AGTTAGACGG AGAACTTCAA
CTGAAAAGGG ACAATGGTAC TAATTTCACA TTGAAGTTCT CAGTAAAAGA AAAAGCAAAT
CAGGCATGTC AACAGCCCTA CATCAATTCG TTAAACAAAA AATGA
|
|---|
| Protein sequence | MSPKNTNDQE PISYQALMDE NRALKDKIQS LRAHLEEAEE LECSIISKVG PERELSKTFR
ESLNSINLTI HSILDFDEIM KKIVSEAARA IGSETAAIFL KKGTRWVLSY SHGFPEDMIG
LGMNDEEEPH IALATKTKKP VAINDAFNDE RVNRDYMRKW NVRSALVVPL ITRDEVIGVI
FFNFHKSTFA FSDVHISFGT QLASSISLTL ENFRLIENLK IELVKHKQAE EALRESEAKY
RQIVETSQEG IWLTDNSNRT VFVNQKVSEM LGYSIEEILG RSPQKFISPE FSTGMEDRLR
EYMPEVNRLE VNRLEVNRLE VNRLIDYRFT RKDGSDLWCI LSFSPLFDDQ GKYAGSLIMI
MDITDCKRTE KALKKAYNSL EEKIKERTAE LKIAYSSLKE NERSLAEAQE LAHIGNWCRN
IETGEVRWSD EVYRIFGFKP QEFGVTYDMF LSRVHPDERE YLVEVVKQAL DKKFFDAEYR
IIRPDGVERI LHEDIKVICD NENTPIRLNG TVQDITERKK AEEALIKLEK TRIKEIHHRI
KNNLQVISSL LDLQADKFKD ESVRKAFSES QNRVFSMSLI HEELYKGDEA CSLDFSSYLE
KLAENLFRTY STSGKSIHLN TDLEENTFLD MDTAVPLGII VNELISNSLK HAFTEKKEGE
IQVRFFRDKE KCNEMHSLIF SLIISDNGIG IPEDLDLENI KSLGLQLVNI LVDQLDGELQ
LKRDNGTNFT LKFSVKEKAN QACQQPYINS LNKK
|
|---|
| |