| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3417 |
|---|
| Symbol | |
|---|
| ID | 3624704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 4380180 |
|---|
| End bp | 4381334 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637702245 |
|---|
| Product | FO synthase subunit 2 |
|---|
| Protein accession | YP_306870 |
|---|
| Protein GI | 73670855 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
|---|
| TIGRFAM ID | [TIGR00423] radical SAM domain protein, CofH subfamily
[TIGR03551] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.1497 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACACGA AAAAACCGAC AATTCCAGAA GATGTAATTG AAAGGGCCTA CAGGGGAAAA
TGTACTAAAG AGGATGCCCT CCTCCTGCTT GAAGGAAATC CTTTTGAGCT GTTTGAGCTC
GCCAATGATC TGCGCGCCAG TACAGTAGGC GATGCAGTCA GCTATGTGGT GAACAGGAAT
ATCTATATCA CAAACAAATG TGTTGGAAAC TGCGGGTTCT GTGCCTACAG GACAGAGAAA
GGGTATATCC TGAGCGTTGA AGAGATACTG GAAAAAGCAG GAGAAGCGAG AAAAGCCGGA
GCTGTGGAGG TATGCATCCA GGGTGGCTAT ATCCCGGAAG CCGATATAGA GTTTTATCTT
GAGATTATAG AGTCAGTAAA AGCCGAATTC CCTGACCTGT GTATTCATGC CCTGTCCCCT
ATGGAAGTAA ATTACGCAGC AGGACTCTCA GGCATGTCAG TTGAAGAAGC CCTGCACAGA
CTTAAAAAAA GTGGGCTTGA TTCCCTTACA GGGACTTCGG CCGAGATCCT TTCCGACAGG
GTAAGAAAGA TTATCTGCCC TGGAAAAATC AATACCCAAC AGTGGATTGA CACCATAACT
GCAGCACATA AAGCAGGGAT TTCTACCAAT TCCACTATTA TGTACGGACA TGTTGAAACC
CTTGAAGAAC GCCTGGACCA TGTCTTTATT ATCCGTGAAA TCCAAAAAGA GACAGGCGGG
TTTACGGAAC TTATCCCGAT GGCCTTTTTG CCTTACAATA ATCCTATAGG GGAAAAGATG
ATTGCATCCG GGAAATTCTC GACCACAGGG CTTGAAGATC TTCAGCTCAT AGCTATTTCC
CGTGTAATTT TGCATACTTA CGTTAAAAAT ATTCAGGCCA CGTGGGTAAA GTTAGGAAAG
AAACTTGCTC AGGTAGCCTT GCAGTGCGGA GCAAACGACC TGGGAGGCAC GCTTATGGAA
GACCAGATCT CCACAGCGTC AGGAGGCAGT AACGGAGAAT ATGTATCTCC TGCCGAGTTT
GAATGGATGA TAAAAGGGGC AGGAAGAACT CCTATGCAGC GGGATACTCT GTACCGGAAA
GTGGAGCCAG TTATTGCTAA TAGAGTAGAA CCCCTTCCCG GTTTAGGAAA GACAAAGATA
GGCAGCAGAG ATTAA
|
|---|
| Protein sequence | MYTKKPTIPE DVIERAYRGK CTKEDALLLL EGNPFELFEL ANDLRASTVG DAVSYVVNRN
IYITNKCVGN CGFCAYRTEK GYILSVEEIL EKAGEARKAG AVEVCIQGGY IPEADIEFYL
EIIESVKAEF PDLCIHALSP MEVNYAAGLS GMSVEEALHR LKKSGLDSLT GTSAEILSDR
VRKIICPGKI NTQQWIDTIT AAHKAGISTN STIMYGHVET LEERLDHVFI IREIQKETGG
FTELIPMAFL PYNNPIGEKM IASGKFSTTG LEDLQLIAIS RVILHTYVKN IQATWVKLGK
KLAQVALQCG ANDLGGTLME DQISTASGGS NGEYVSPAEF EWMIKGAGRT PMQRDTLYRK
VEPVIANRVE PLPGLGKTKI GSRD
|
|---|
| |