| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3401 |
|---|
| Symbol | |
|---|
| ID | 3624648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 4365298 |
|---|
| End bp | 4366743 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637702229 |
|---|
| Product | F420H2 dehydrogenase subunit N |
|---|
| Protein accession | YP_306854 |
|---|
| Protein GI | 73670839 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1007] NADH:ubiquinone oxidoreductase subunit 2 (chain N) |
|---|
| TIGRFAM ID | [TIGR01770] proton-translocating NADH-quinone oxidoreductase, chain N |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.280357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAATT TAATGTTTCT TGCACCTGAA ATTGCAATCG CTGCAACCGG TCTGATTATA
CTGTTTATAG GGGTTTTCAT GTCTTCCCGG ACTAAGAATG TGCTGGGTTA CCTGGCAACT
CTTGGAATCC TTGCAGCTCT GGTCCTGACG ATACAGAGTT TCGGGACCGA AGCTACGATG
TTCTACGGCA CTGTCAGCAT TGACGCCCTT TCCCAGTTCT TCAAACTGGT CTTCCTGGTA
GTTGCACTGA TTGTTTCAAT TGCTTCAATC AAGTATAATG AAAACAGTGA CCACACCGAA
GAGTTTTATT CCCTGGTGCT TTTCGCAACC CTCGGGATGA TGGTTGTTGC CTCTTCAAAC
GACTTTATTC TGCTCTTCTG TGCCTTTGAG CTGGCAAGCT TTGCTACCTA TGCCCTTGCA
GGTTTTGAGA AACAAAACCC AAGGTCCCTT GAAGGAGCCA TGAAGTACTT TATGATGGGT
GCGGTTTCTT CAGCGCTTAT GCTGTTTGGG ATCTCTTTTG TGTATGGAGC AACAGGCACT
ACCAGCATTC CAATGATTGC TGAAAATGTC TCCCTCCTGG CAGAAAACCC TATAGGGCTT
GTTGCAGTCG TGCTGCTAAT TGCAGGTTTC GGCTTCAAGA TGGCTCTTGT ACCTTTCCAT
ATGTGGGCTC CGGATACATA TCAGGGTTCA CCTTCAGTTG TCTCTTCCCT GCTTGCAGCC
GGGTCGAAGA AAATGGGGTT TGTGGCAGCT TTCAGGGTTT TCATCCTGGC GCTTGCTGCA
CTCCAGCCTG ACTGGCAGTT TGCTTTCACA ATCCTTGCAG TCGTAACCAT GACCTTCGGA
AACGTGGTTG CAGTCTCCCA GACCAGTGTA AAACGCATGC TTGCTTACTC TTCTCTGGCT
CAGGCAGGAT ACATTGCAAT GGCTTTTGTG GTAATGACCC CTATGGCTCT TACAGGTGGA
ATCTTCTATA CCCTTGCCCA TGCCTTTATG AAAGGAGGAG CTTTTATTGC AGCCGGCGCA
GTTGTCTGGA TGATAACTAC CCAAAGAACA GGGGACCTGC AGGTTCCAGA CCACCTGGAC
AACTTCAGGG GCCTTGGAAA GAGAATGCCG CTGGTAGCTC TTTGCATGAC GGTTTTCGTC
TTTGCCCTTG CAGGGATCCC ACTGACTTCC GGTTTCATGG CCAAGTTCGT GCTCTTCTCT
TCAACCATTC AGGCAGGCAT GACCTGGCTT GCGGTAATTG CAATTCTGAA CAGTGCCCTT
TCATTGTTCT ATTATGCAAG GCTTGTAAGG TACATGTACT TCCTTCCCCC TAAAGGCAAA
AAGATCGGCT TGCCTTTCCC ATATGCAGCA GCTCTCCTGC TTGCAACAGC CGGCGTGCTT
GTAATGGGAC TCTGGCCTGA ACCTTTCTTG CAGTGGGCAA TGGAAGCAGC AAAGGTACTC
ATCTAA
|
|---|
| Protein sequence | MENLMFLAPE IAIAATGLII LFIGVFMSSR TKNVLGYLAT LGILAALVLT IQSFGTEATM
FYGTVSIDAL SQFFKLVFLV VALIVSIASI KYNENSDHTE EFYSLVLFAT LGMMVVASSN
DFILLFCAFE LASFATYALA GFEKQNPRSL EGAMKYFMMG AVSSALMLFG ISFVYGATGT
TSIPMIAENV SLLAENPIGL VAVVLLIAGF GFKMALVPFH MWAPDTYQGS PSVVSSLLAA
GSKKMGFVAA FRVFILALAA LQPDWQFAFT ILAVVTMTFG NVVAVSQTSV KRMLAYSSLA
QAGYIAMAFV VMTPMALTGG IFYTLAHAFM KGGAFIAAGA VVWMITTQRT GDLQVPDHLD
NFRGLGKRMP LVALCMTVFV FALAGIPLTS GFMAKFVLFS STIQAGMTWL AVIAILNSAL
SLFYYARLVR YMYFLPPKGK KIGLPFPYAA ALLLATAGVL VMGLWPEPFL QWAMEAAKVL
I
|
|---|
| |