| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3342 |
|---|
| Symbol | |
|---|
| ID | 3626200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 4287428 |
|---|
| End bp | 4289083 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637702175 |
|---|
| Product | adenine deaminase |
|---|
| Protein accession | YP_306800 |
|---|
| Protein GI | 73670785 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1001] Adenine deaminase |
|---|
| TIGRFAM ID | [TIGR01178] adenine deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0903349 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00263783 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACGT ACCAGGGAAT TATTGTCGAT GCCATTTACA GGCGGAAGTT CAAAGGTGAA
ATTGCCGTTG AACACGGGAA GATCATCAGT ATTGAGGAGA AAGAGCACGA TATTGAACAG
TATATCCTTC CAGGGCTTGT AGATGCCCAT GTGCATATCG AAAGTTCGAT GACCGTGCCT
TCGGTTTTTG CCCGGATGGC GGTTGCAAGA GGTACGGTTG CAGTTGTTAG CGACCCTCAT
GAGATTGCAA ACGTCATGGG AGAAGAAGGC ATTGATTACA TGCTTGAGGA TGCCAGAAAA
GCTCCTCTGA AGGTCTTTTT CGGAGTACCA TCCTGTGTGC CAGCCACGCC TTTTGAATCC
GCAGGAGCGG TGCTGGATGC GGAGGCTGTT GACAGATTGC TGGCAAGGGA AGATCTTCAT
TACCTTTCTG AGATGATGAA CTTCCCTGGG GTGGTTATGG AATTCCCTGA GGTAATAGCC
AAACTGGAAT CCGCTAAAAA GTACGGCAAA AATATAGACG GGCATGCTCC CGGTTTGAAT
GGAACCGATC TCCAGAAATA CGTGGGCGCA GGAATTTCAA CAGATCATGA ATCTTTTGCT
TATGAAGAAG CGGTTGAGAA AATAAAGCTC GGGATGAACA TACTTATCCG AGAAGGAAGT
TCAGCTAGAA ATTTCGATAC ACTGTATAAA TTGATAGACG AATATCCCGA ATCAGTCATG
CTCTGCACCG ATGATTCCCA TCCTGATACT TTGATATATG AAGGGCATAT CGACAAGCTT
CTCAGACGCG GGCAGGAAAA AGGACTTGAT ATTTATAACC TCATAAGGGC AGCGGTTATC
AATCCTGTGG AACATTACGG ACTTAATGTC GGGCTGCTGC GTGAGGGAGA TCCTGCCGAT
TTTATTATTG TTGACGACCT GAAAGCGTTC AATGTGCTGA AGACTTTTAT TGACGGAAGT
TGCGTTTACA ATGACGGAAA GGTTCTTTTT TCAGTTGAAC AAGCTCCTGC AAAAAATGTC
TTTAACAGAA ATAAAATCTC AGTTGATGAT GTAAAACTGG CTATGCCTGC TTCCGGGAAT
AACGGGGAAC AAATGAAAAA AATCCGAGTA ATAGTTGCCC AGGACGGAGA ACTGGTCACA
GGCCAGGAAT TGGCACTTCC AAAAGTAGAA AACGGAAATC TGATTTCAGA TCCTGCCAGG
GATATTTTGA AAATGGTTGT TCTGAGCAGG TATGCTGATG ACCCTGTCCA GATCGGTTTC
ATTAAAAATA TAGGCCTGAA AAAAGGAGCT ATTGCTAGCA GCATTGCCCA TGACAGTCAT
AATATAATTG CAGTCGGAGC AACGGACGAG GATATAGTTG GAGCCGTCAA CAGGCTGGTG
GAAAACCGGG GAGGAATCGT TGTTGGAACC GCAGACAATC TTATTGATCT TCCACTGGAG
GTTTCAGGCC TCATGAGCAC TCTGGACGGA AAAGAAGTAG CTGTAAGGTA CGAACAATTA
AATGAAGAAG CTCGGAAACT GGGAACTTCG CTTATGTCGC CTTTTATGAC ACTTTCATTT
ATGTCGCTTC TGGTAATTCC TGAACTTAAA TTGGGAGACA AAGGCCTGTT TGATGTGACA
AAATTCGAAT TTGTTGAGCT TTTTGCGGGT GAATAA
|
|---|
| Protein sequence | MQTYQGIIVD AIYRRKFKGE IAVEHGKIIS IEEKEHDIEQ YILPGLVDAH VHIESSMTVP
SVFARMAVAR GTVAVVSDPH EIANVMGEEG IDYMLEDARK APLKVFFGVP SCVPATPFES
AGAVLDAEAV DRLLAREDLH YLSEMMNFPG VVMEFPEVIA KLESAKKYGK NIDGHAPGLN
GTDLQKYVGA GISTDHESFA YEEAVEKIKL GMNILIREGS SARNFDTLYK LIDEYPESVM
LCTDDSHPDT LIYEGHIDKL LRRGQEKGLD IYNLIRAAVI NPVEHYGLNV GLLREGDPAD
FIIVDDLKAF NVLKTFIDGS CVYNDGKVLF SVEQAPAKNV FNRNKISVDD VKLAMPASGN
NGEQMKKIRV IVAQDGELVT GQELALPKVE NGNLISDPAR DILKMVVLSR YADDPVQIGF
IKNIGLKKGA IASSIAHDSH NIIAVGATDE DIVGAVNRLV ENRGGIVVGT ADNLIDLPLE
VSGLMSTLDG KEVAVRYEQL NEEARKLGTS LMSPFMTLSF MSLLVIPELK LGDKGLFDVT
KFEFVELFAG E
|
|---|
| |