Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A3230 |
Symbol | |
ID | 3627347 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | + |
Start bp | 4147881 |
End bp | 4149176 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637702067 |
Product | putative pseudouridylate synthase |
Protein accession | YP_306692 |
Protein GI | 73670677 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1258] Predicted pseudouridylate synthase |
TIGRFAM ID | [TIGR01213] conserved hypothetical protein TIGR01213 |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000174265 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0615713 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGTAC TCGAAATTTC AAAAAAGATT CTGCATGAAG GCCCGATATG TGATCACTGT CTGGGCCGTC AGTTTGCAAA ATTATCCACA GGCCTGAGCA ACAGAGAACG TGGGCAGGCC TTGAAACTCG CCCTTGTCCT TGAAGGGGAT CGTATTTATA AAGCTGAAAA CGATGATTCC CTTCTCAAAG AACTTGCTCC TTGCAGTGTA TTTGCAAGAA AGGCTCTTGG AATAGAGGGT GAAGACGAAC AGTGCTGGGT CTGCCTTAAT CAGTTTAAAA AGCTGGATGA ATGGGCCGAT GAAGCTGTAA AAGCCCTTGA AGGGCTAGAA TATTCTACCA TTCTTGTAGG CACAAAGGTC AGCGGGCTTC TGAGTGAAAA CGAGGAGATG CTTTGGGCTG AGGCCGGAAC TGCATACGCT GAACAGCTAA AGACCGAGCT GAACAGGGAA GTTGGCAAGC GGATAGCCGA AAAAGTCCAG AAAGATGTGG ATTTCGAAAC CCCTGATATT ACAATTACCC TTGACCTCGC AAAAAACAAG CTTGATCTCC AGCTCCGCTC GGTATATATT CTAGGGCGCT ACCGCAAACT TATCAGGGGA ATTCCCCAGA CGCGCTGGCC TTGCAGAAAA TGCAAGGGCA AAGGATGTGA GAGCTGTAAT TTTACAGGGA AACAGTATCA GGAATCCGTA GATGAGCTTA TAAAAGGGCC TGTAGTTGAA GCTTTCCAGG CCGTTGATAC GGCTTTTCAC GGCTCTGGCA GGGAAGATAT CGATGCCCTG ATGTTGGGAA GCGGCAGGCC TTTTGTAGTA GAAGCAAAAT CTCCTGTAAA GCGAAGCACA GACCTTGAAG AGCTTATGCG AAATATTAAC GAGAAAGCTG CCGGAAAAGT TGAGGTAAGA GAGTTTTCCT TCACTGGAAA GGATATGATT GAGACTTTGA AAAGCTCAAA GGCGGATAAA ACTTATAAGC TTAAAGTTAC ATTTAAAGAG CCTGTTTCGG AGGAAAAGCT TAAATCCAGC CTTGAGGCTT TGAATGGCAT AGAGATCTCA CAACAGACTC CAAGGAGAGT AGTTCACAGG CGGGCTGACC TTGTCAGGAA AAGACATGTG CACAGCATCA AGCTCGACGA ACTGACAGAC GAAGGTTACG CTTACATAAC AGTAAACTGC GAAGGCGGGC TGTACGTAAA AGAGCTCGTT TCCGGAGATG AGGGCAGGAC AAACCCGAAC CTGAGCGGAC TTTTAGGGAT TCCTGCGCTT GTGGAAGATC TTGATGTGGT CAACGTCGAT ATTTAA
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Protein sequence | MDVLEISKKI LHEGPICDHC LGRQFAKLST GLSNRERGQA LKLALVLEGD RIYKAENDDS LLKELAPCSV FARKALGIEG EDEQCWVCLN QFKKLDEWAD EAVKALEGLE YSTILVGTKV SGLLSENEEM LWAEAGTAYA EQLKTELNRE VGKRIAEKVQ KDVDFETPDI TITLDLAKNK LDLQLRSVYI LGRYRKLIRG IPQTRWPCRK CKGKGCESCN FTGKQYQESV DELIKGPVVE AFQAVDTAFH GSGREDIDAL MLGSGRPFVV EAKSPVKRST DLEELMRNIN EKAAGKVEVR EFSFTGKDMI ETLKSSKADK TYKLKVTFKE PVSEEKLKSS LEALNGIEIS QQTPRRVVHR RADLVRKRHV HSIKLDELTD EGYAYITVNC EGGLYVKELV SGDEGRTNPN LSGLLGIPAL VEDLDVVNVD I
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