Gene Mbar_A3230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A3230 
Symbol 
ID3627347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp4147881 
End bp4149176 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content47% 
IMG OID637702067 
Productputative pseudouridylate synthase 
Protein accessionYP_306692 
Protein GI73670677 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1258] Predicted pseudouridylate synthase 
TIGRFAM ID[TIGR01213] conserved hypothetical protein TIGR01213 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000174265 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0615713 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGTAC TCGAAATTTC AAAAAAGATT CTGCATGAAG GCCCGATATG TGATCACTGT 
CTGGGCCGTC AGTTTGCAAA ATTATCCACA GGCCTGAGCA ACAGAGAACG TGGGCAGGCC
TTGAAACTCG CCCTTGTCCT TGAAGGGGAT CGTATTTATA AAGCTGAAAA CGATGATTCC
CTTCTCAAAG AACTTGCTCC TTGCAGTGTA TTTGCAAGAA AGGCTCTTGG AATAGAGGGT
GAAGACGAAC AGTGCTGGGT CTGCCTTAAT CAGTTTAAAA AGCTGGATGA ATGGGCCGAT
GAAGCTGTAA AAGCCCTTGA AGGGCTAGAA TATTCTACCA TTCTTGTAGG CACAAAGGTC
AGCGGGCTTC TGAGTGAAAA CGAGGAGATG CTTTGGGCTG AGGCCGGAAC TGCATACGCT
GAACAGCTAA AGACCGAGCT GAACAGGGAA GTTGGCAAGC GGATAGCCGA AAAAGTCCAG
AAAGATGTGG ATTTCGAAAC CCCTGATATT ACAATTACCC TTGACCTCGC AAAAAACAAG
CTTGATCTCC AGCTCCGCTC GGTATATATT CTAGGGCGCT ACCGCAAACT TATCAGGGGA
ATTCCCCAGA CGCGCTGGCC TTGCAGAAAA TGCAAGGGCA AAGGATGTGA GAGCTGTAAT
TTTACAGGGA AACAGTATCA GGAATCCGTA GATGAGCTTA TAAAAGGGCC TGTAGTTGAA
GCTTTCCAGG CCGTTGATAC GGCTTTTCAC GGCTCTGGCA GGGAAGATAT CGATGCCCTG
ATGTTGGGAA GCGGCAGGCC TTTTGTAGTA GAAGCAAAAT CTCCTGTAAA GCGAAGCACA
GACCTTGAAG AGCTTATGCG AAATATTAAC GAGAAAGCTG CCGGAAAAGT TGAGGTAAGA
GAGTTTTCCT TCACTGGAAA GGATATGATT GAGACTTTGA AAAGCTCAAA GGCGGATAAA
ACTTATAAGC TTAAAGTTAC ATTTAAAGAG CCTGTTTCGG AGGAAAAGCT TAAATCCAGC
CTTGAGGCTT TGAATGGCAT AGAGATCTCA CAACAGACTC CAAGGAGAGT AGTTCACAGG
CGGGCTGACC TTGTCAGGAA AAGACATGTG CACAGCATCA AGCTCGACGA ACTGACAGAC
GAAGGTTACG CTTACATAAC AGTAAACTGC GAAGGCGGGC TGTACGTAAA AGAGCTCGTT
TCCGGAGATG AGGGCAGGAC AAACCCGAAC CTGAGCGGAC TTTTAGGGAT TCCTGCGCTT
GTGGAAGATC TTGATGTGGT CAACGTCGAT ATTTAA
 
Protein sequence
MDVLEISKKI LHEGPICDHC LGRQFAKLST GLSNRERGQA LKLALVLEGD RIYKAENDDS 
LLKELAPCSV FARKALGIEG EDEQCWVCLN QFKKLDEWAD EAVKALEGLE YSTILVGTKV
SGLLSENEEM LWAEAGTAYA EQLKTELNRE VGKRIAEKVQ KDVDFETPDI TITLDLAKNK
LDLQLRSVYI LGRYRKLIRG IPQTRWPCRK CKGKGCESCN FTGKQYQESV DELIKGPVVE
AFQAVDTAFH GSGREDIDAL MLGSGRPFVV EAKSPVKRST DLEELMRNIN EKAAGKVEVR
EFSFTGKDMI ETLKSSKADK TYKLKVTFKE PVSEEKLKSS LEALNGIEIS QQTPRRVVHR
RADLVRKRHV HSIKLDELTD EGYAYITVNC EGGLYVKELV SGDEGRTNPN LSGLLGIPAL
VEDLDVVNVD I