| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3203 |
|---|
| Symbol | |
|---|
| ID | 3627106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 4118661 |
|---|
| End bp | 4119650 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637702042 |
|---|
| Product | SSU ribosomal protein S6P modification protein |
|---|
| Protein accession | YP_306667 |
|---|
| Protein GI | 73670652 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) |
|---|
| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.398244 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0345991 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TAGGGATTGT CATCACTGAC CCGGAAGACT GGACAGCCAG GGCACTTACT
GACGCATCGA GAAAAAAAGA TTTTTCTCCT TTTGTTCTGG ATCTCAGGGA TGCAGAGGTC
AGCATGAATT CACCAGTTTG GGAAACGAAA GCTGAAGAAT CAAACGTGGT CTTCAAAGTA
GGAGATATAA AACTCTCTGA CCTTGACGCG ATAATTGTAA GAGATGTGGG TGCAGGAGCT
TTCGAAGGCG TGTCTTTCAG GTTTGATATC CTGCGTGAAC TGGAAGACGA AGGAATCCCT
GTTGTTAACT CACCAGAAGC TATCCGGAAT GCTGCAAATA AATACCATGC TTCCTATCTT
CTGGCAAAGG CCGGACTGCC TGTACCAAAA ACCGTAGCTG TGCAGGATAT GGAAGCCGCC
CTAAAGGTAA TATCAAGATT TGGAGACGCC GTCATTAAGC CTGTTTTTGG ATATAAAGGA
AAGGATATTG CAAGAGTAAG GAACGGCGAA GTTCGGTTTT CGGATAGAAA AATAGAACCC
TCATCACCGG AATCAACTCT CAATCAGTTG CTTGAAGAAA GAGGTATGCT GTATATCCAG
GAGTTCATAG AGAATCCGGG AAGAGATATC AGAGCCTTTG TTGTTGACGG GAAGGCTATT
GGAGCAATTT ACCGTAAAGC AGCCTCTGGC TCCTGGGTCA ATAACCTGAG CCAGGGAGGA
AATGCAGACC GGTGTGTGCT CACGGAAGAA CAAAAAGAAA TTGCTGAGAA GGCTGCCCTG
GCAGTAAACA CGACTTTTGC AGGTGTTGAT ATTATAGAAG GGTTGACTGA TGAGATTCCT
AATGAAAAAA TTGAGATTCA TTCTAGCCAA ACTGAGGAGA GCCCTAAAAT TCTTGAAGTC
AATGGAACAC CATCAGGAAA AGGTATTTTT GATGCCTGGG GAATAAATAC GGCAGAGTAT
ATTATAAAAT ACATCGAAAA AATTTTATGA
|
|---|
| Protein sequence | MKKIGIVITD PEDWTARALT DASRKKDFSP FVLDLRDAEV SMNSPVWETK AEESNVVFKV
GDIKLSDLDA IIVRDVGAGA FEGVSFRFDI LRELEDEGIP VVNSPEAIRN AANKYHASYL
LAKAGLPVPK TVAVQDMEAA LKVISRFGDA VIKPVFGYKG KDIARVRNGE VRFSDRKIEP
SSPESTLNQL LEERGMLYIQ EFIENPGRDI RAFVVDGKAI GAIYRKAASG SWVNNLSQGG
NADRCVLTEE QKEIAEKAAL AVNTTFAGVD IIEGLTDEIP NEKIEIHSSQ TEESPKILEV
NGTPSGKGIF DAWGINTAEY IIKYIEKIL
|
|---|
| |