| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3192 |
|---|
| Symbol | |
|---|
| ID | 3627134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 4106255 |
|---|
| End bp | 4107235 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637702031 |
|---|
| Product | alanine dehydrogenase |
|---|
| Protein accession | YP_306656 |
|---|
| Protein GI | 73670641 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
|---|
| TIGRFAM ID | [TIGR02371] alanine dehydrogenase, Archaeoglobus fulgidus type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.897841 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00412741 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATAT TATGGCTGGC TCAGGAAGAA GTAATAAATG TAATAGATAT GAGTTCTGAT
ATGCAGGTCG TAGAAAGGGC TTTCAGGCAG CATGGGCTTG GTAGGGTCCA GATGCCTCCA
AAGTCTTACC TTTATTATAC GGCGTATAAC GGGGATCTGC GGACAATGCC TGCATATCTT
GAAGAGGAGA ATATTACTGG TGTGAAAATT GTAAACGTCC ACCCTGGAAA CCCGGATCGT
GGGCTTCCCA CGGTAATGGC GCTTATTGTT CTCATTTCTC CGGAAACAGG CGTTCCTGTA
GCAATTATGG ACGGAACCTA CCTGACTGAC GTCAGGACAG GAGCTGCAGG GGGAATTGCC
GCAAAATACC TCGCAAGGAA GGATTCAAAA GTTATAGGCC TTGTTGGGGC CGGAAACCAG
GCAAAGACTC AACTCAAAGC TCTTTGCGAA GTTTTTGAAC CCGAACTGGT AAGGGTTACT
TCCAGCACAA AGGAAAGTTC TGAGCAATTT ATCCGGGAAA TGGCAGATAC TACTCCCTGT
GAAATCCGTT ACGAAGAAAA CATTGAAAAG GTCTGCAACT GCGATATCCT TGTTACGACC
ACTCCTACCA GAAAACCTAT CGTAAAGGCC CAGTGGATCA AAGAAGGCAC TCATATAAAT
GCGATAGGGG CTGATGCAGT AGGAAAAGAA GAACTTGACC CTGAACTATT AATCCGGTCC
AAGATAATTG TGGACGATAT TGTCCAGGCG CTTCACTCCG GAGAAGTAAA CGTTCCTCTC
TCCAAGCACT ACATCTCGGA AAACGATATT CATGCCGAGC TCGGTGAAGT AATAGTTGGC
CTGAAACCCG GCAGGACAAG TGATGAAGAA ATTACGATCT TCGATTCAAC AGGTCTCGCT
ATTCAGGATG TTGCAAGTGC GCACCTGGTT TATGAAAGGG CTGTCAGTAA AGGGCTCGGC
AAGCAAGTTC TTATGTTCTG A
|
|---|
| Protein sequence | MEILWLAQEE VINVIDMSSD MQVVERAFRQ HGLGRVQMPP KSYLYYTAYN GDLRTMPAYL
EEENITGVKI VNVHPGNPDR GLPTVMALIV LISPETGVPV AIMDGTYLTD VRTGAAGGIA
AKYLARKDSK VIGLVGAGNQ AKTQLKALCE VFEPELVRVT SSTKESSEQF IREMADTTPC
EIRYEENIEK VCNCDILVTT TPTRKPIVKA QWIKEGTHIN AIGADAVGKE ELDPELLIRS
KIIVDDIVQA LHSGEVNVPL SKHYISENDI HAELGEVIVG LKPGRTSDEE ITIFDSTGLA
IQDVASAHLV YERAVSKGLG KQVLMF
|
|---|
| |