Gene Mbar_A3174 details

Gene Information

• Locus tag: Mbar_A3174
• ID: 3626863
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanosarcina barkeri str. Fusaro
• Kingdom: Archaea
• Replicon accession: NC_007355
• Strand: +
• Start bp: 4085740
• End bp: 4086408
• Gene Length: 669 bp
• Protein Length: 222 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637702013
• Product: 3',5'-cyclic-nucleotide phosphodiesterase
• Protein accession: YP_306638
• Protein GI: 73670623
• COG category: [R] General function prediction only
• COG ID: [COG1409] Predicted phosphohydrolases

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.0822292
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.000980029
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGTTGACG GTATAAACCA GCTGGAACCG AACCTTGTCG TGATTACAGG TGACCTGACC 
GAGAATGGGT TTTCAGCAGA ATATGATGGA GTAAAGCGGT TTATTGACAG GATTGAATGT 
AAAAATAAAA TTCTTGTTCC GGGAAATCAT GATTCAAAAA ATGCAGGATA TGTGCACTTT 
GAAGACCTCT TCACAGACAG GTACTTTTCA CGGAATTTTG AGAATGTTAC GGTTGTCGGG 
GCCGATTCTT CACAGCCCGA TCTTGATGAA GGTCATCTGG GCAGGGAAAA CTATGGCTGG 
ATCAAAGAAG CTTTTTCAGG AGAAAATTTC AAGGTTTTTG CCATGCACCA CCACCTTGTT 
CCTATACCAC TGGCAGGCAG GGAGAATACT GTCCTTGTGG ATGCAGGCGA TGTGCTCGAA 
CTTCTGAACC GCTGCAAGGT GAATCTTGTC CTCTGCGGGC ACTGCCACAT TCCCTGGGTC 
TGGAACCTCA ATAACATGCT TGTGGTAAAT GCAGGCACTT TTTGTTCTTC CAAAACAAGG 
GGAAAGACAA AGCAATGTTA TAACCTCATC CAGGCTGACA AAGAGAATCC CGCTGGGGAC 
TGGAAAGTCC GTGTATCCAG AGTTTTTTCA AAAGGAGATC GGGAACTGGT TACTGAAACA 
GTAATGTAA 

 

Protein sequence

MVDGINQLEP NLVVITGDLT ENGFSAEYDG VKRFIDRIEC KNKILVPGNH DSKNAGYVHF 
EDLFTDRYFS RNFENVTVVG ADSSQPDLDE GHLGRENYGW IKEAFSGENF KVFAMHHHLV 
PIPLAGRENT VLVDAGDVLE LLNRCKVNLV LCGHCHIPWV WNLNNMLVVN AGTFCSSKTR 
GKTKQCYNLI QADKENPAGD WKVRVSRVFS KGDRELVTET VM