| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3167 |
|---|
| Symbol | |
|---|
| ID | 3626856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 4077110 |
|---|
| End bp | 4078324 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637702006 |
|---|
| Product | tRNA nucleotidyltransferase |
|---|
| Protein accession | YP_306631 |
|---|
| Protein GI | 73670616 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00127304 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAACAAAA TATTAACTAA ATTCAGACCA CACGCACTTA AAATAAAAGA TGCAGGTGGT
ACATTATACA TAGTAGGTGG AGCAGTACGC CGCTTTTTAA TGTGCCAAAC TCCCCATGAC
GTTGATTTTT GTGTATGTGG ATTGACAGTA GATACGTTTA AAGACTTGTT TCCAGATGCA
CGCCAACAGG GGAACCAGTT TCCTGTTTTT GTGGTAGACG ATTGTGAGTT TGCTATGGCA
CGTACTGAAA AAAAGGTGTG CGCAGGATAT AACGGATTTG AAATTAATTC AGATCCGTCT
GTAACAATTG AAGAAGATCT TTGTAGAAGA GATCTGACAA TCAATTCAAT TGCAATAGAC
GTAATTACAG GTATGATTGT AGATCCGTTC AACGGGGCAG AGGATCTTAT AAATGGGATA
ATAACTCCAA CATCAGACGC ATTCAAAGAA GACCCGGTAA GAGTTATTAG GGCGGCGAGA
TTTATGTGTG AATATCCCAC GTTCAGAGCA TCACCAACGT TGATTATGTA TATGTTAGAT
CTGGTACATG AAATTAAATT GATATCTGAT GACCACAAAT TTTCCGAACT AAAAAAGGTA
TTTTCATCTC CAAAACCATC TAGATATTTT AACATTTTAA ATTTGGGGCA CGCTCTATAC
ATTACATTTC CTGAAATATA TTCATTGATA GGAATCCCAC AAGCTCATCA TAGCGATGGA
GACGCTTTTG AGCATACTAT GAGAGTGCTT GATGATTGTC GAGAATTAAC CGATGATCCG
GTTTGCTTAT TCGCGGCACT CACCCATGAT TTAGGCAAAG CTACAACCCC GACAGAAATT
TTACCAGCAC ACCACGACCA TGAAACAAGA AGCGTGGAGA TTATTGATAA AATAGATTGG
GTTCCAAATG AATGGAAATA TTTTGCTAAG GTCTTTGCAG CCGACCACAT GAGGGGGCAC
AGATTCAGAG AAATGAGGAG AGGTAAGAGA GTATCACTAC TTGAAAGAAT ACATAAGTCT
AACAGAGGAT TAGAGGGTTT TTGCAAAGTC TTATATGCAG ACAAACCTAC TCCTGGCACA
ATGAGGGACA TTGCTTTAAT GCATGCAACT TACGCGAAGA TTTACTCTAT TTCTGGAGAC
GATTTGCCCG CCACAACTCC AAAAGGCGAA GCTTTCGGAA AGGTATTACA TCAGAAAAGA
GTAGAGATGA TATAA
|
|---|
| Protein sequence | MNKILTKFRP HALKIKDAGG TLYIVGGAVR RFLMCQTPHD VDFCVCGLTV DTFKDLFPDA
RQQGNQFPVF VVDDCEFAMA RTEKKVCAGY NGFEINSDPS VTIEEDLCRR DLTINSIAID
VITGMIVDPF NGAEDLINGI ITPTSDAFKE DPVRVIRAAR FMCEYPTFRA SPTLIMYMLD
LVHEIKLISD DHKFSELKKV FSSPKPSRYF NILNLGHALY ITFPEIYSLI GIPQAHHSDG
DAFEHTMRVL DDCRELTDDP VCLFAALTHD LGKATTPTEI LPAHHDHETR SVEIIDKIDW
VPNEWKYFAK VFAADHMRGH RFREMRRGKR VSLLERIHKS NRGLEGFCKV LYADKPTPGT
MRDIALMHAT YAKIYSISGD DLPATTPKGE AFGKVLHQKR VEMI
|
|---|
| |