| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3120 |
|---|
| Symbol | |
|---|
| ID | 3626571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 4011305 |
|---|
| End bp | 4012945 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637701959 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_306587 |
|---|
| Protein GI | 73670572 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000013219 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCTC TCTCTTTCCA ATTTTTCGCA GGAAAATATC ATTCAACTCC CTGGGGACGG
CACGTAAATG AAGGAGTTCC AGAGTGGCCT CCGTCTCCCT GGAGGATATT GCGTGCAATT
ATTGCTACAT GGAAGTTAAA GGTAGATGCT GAGGAGAAAG ATGTCAGAAA CCTCATTCTG
AGTCTCCTCG AGCCTCCTGT GTTTTATTTA CCACCAGCAA CTGTTGGGCA CACAAGGCAT
TATATGCCCT GGGATAAAGG AGACAAAAAA AATTGGCATG CTTCCAAGAC TTTGATTTTC
GATACCTTTG TAGCCGTGCC AAGGGAAAGT CCTGTTATTA CAGTTTGGGA AAATGTTTCT
CTGGATGACA GATCTCTAAA ACTTATAAAG CAAATCGCAG AAAATCTCTC ATACTTCGGC
AGGGTAGAGT CATGGTGCAA AGCTGAGGTG ATTGAGGAAG GTAAGCTACC CAGTGTCCTT
AAAGAACTTG ATAGCTACTT TGTCTCAAAG CCGCTAGCTG AAGAAGACGT CCTAAGCAGT
TCTGAAGAAA TTGTTAATGT CCTCTGTGCG AATGAGGGTA TAGATCCAAA GATCTCTTTA
GATGAACTTG ATAAGAAAGG CAACAACAAG CACCCTCTGC TTATACGAAC ATCCATACTA
AGAACCCAAA TTAAAAATCT ATATCCACCT ATGAGCAGGT TGGTTCAATA CACTCGATCG
CTTGACTGTT TTGAGCCTTC TAAAATCAGT CATGTTGTAG ACAGGAAAGA AAAGAAAGTG
AATGTGGTCA GGTTTTTGCT TGATTCAAAT GCGCTTCCTC CAGTAACAGA GAGCCTAAAA
ATTGCAGACA TTGCTCGCAA TACAGCTATT TCAACATATG GAGGGAAAAG CCACAAAAAA
ACCTCTGTTC TTTCTGGGAA AGATGACGAT GGAAATATAC TGCTCAGCAA TATGCATACT
TTCTATCTAC CAAGCGATGA GGACAGAGAC GGAAAACTGG ATCATCTGAC ACTGTATGCT
CCTGGAGGAT ATGATGAAGC TCACCAGCTG GCTCTTGCAA AGATGAAAAA GTTATACGGA
TATAATTTGA AGAACGATGT TAACCTTCTG TTATTGGGTA TGTTTGATTT AGATCAGTGG
TCTGAGACTC GAAAAATTAT TCCTCTATCG TCTTCTAGAA CATGGAAGTC CTTTACACCG
TATATTTTAA CCAGACATCC AAAGGTTACG CGAGCAGGCC AATGGAAAAT CCAAGGAACC
CCTAAAAACG TTGAGATAAA GGTTCCTGAA AATTGTGCGC CTTATGCGAC TAAAGAACAT
TTGATGCTTG AATATGGAGT CCTTCCTGAC TTGTCTGGAA TGCAGATCGA TGGGCCCGTT
TCTCAACTTC TTTTTTCAAT AGATAGAGTA GGATTGCCAC AGCCGTCTTC GATTGAACCT
ATTCCAGCCT ACGAAATAAA TGGAACAATG AGACAATGGC TTACCTTCAA ACGTTACAGA
AGAGGTAAAC AGTCTCCTCC ATCCGGAAAT CCTTATGGAT TCCGCCTTAG TTTTCCAGAA
GAAGTGAAAG GCCCTGTGGC ACTGGGTCAT GGATGCCATT ATGGGCTTGG AATCTTCGTT
CCAGACAACG AATCAAGATA G
|
|---|
| Protein sequence | MFALSFQFFA GKYHSTPWGR HVNEGVPEWP PSPWRILRAI IATWKLKVDA EEKDVRNLIL
SLLEPPVFYL PPATVGHTRH YMPWDKGDKK NWHASKTLIF DTFVAVPRES PVITVWENVS
LDDRSLKLIK QIAENLSYFG RVESWCKAEV IEEGKLPSVL KELDSYFVSK PLAEEDVLSS
SEEIVNVLCA NEGIDPKISL DELDKKGNNK HPLLIRTSIL RTQIKNLYPP MSRLVQYTRS
LDCFEPSKIS HVVDRKEKKV NVVRFLLDSN ALPPVTESLK IADIARNTAI STYGGKSHKK
TSVLSGKDDD GNILLSNMHT FYLPSDEDRD GKLDHLTLYA PGGYDEAHQL ALAKMKKLYG
YNLKNDVNLL LLGMFDLDQW SETRKIIPLS SSRTWKSFTP YILTRHPKVT RAGQWKIQGT
PKNVEIKVPE NCAPYATKEH LMLEYGVLPD LSGMQIDGPV SQLLFSIDRV GLPQPSSIEP
IPAYEINGTM RQWLTFKRYR RGKQSPPSGN PYGFRLSFPE EVKGPVALGH GCHYGLGIFV
PDNESR
|
|---|
| |