| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2999 |
|---|
| Symbol | |
|---|
| ID | 3626661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 3862206 |
|---|
| End bp | 3863195 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637701843 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_306473 |
|---|
| Protein GI | 73670458 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2203] FOG: GAF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.91602 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000583467 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAG TGGTTTCAAA CTCGGCTAAG AAGGGGAAGA GCAGGCAAAA AGCCTGTAAA
TACATGAATG AAGCAGCTTT ATGTAACGCT CTTGAGATGG CAAAGGAGCT GATCTCGGTA
ATAAATAAAG TCCCTGTCAC GGTTTTTCTC TGGAGACCAG AGAAGTACTG GCCTGCCGAG
TTTGTCTCAG AGAACATAAA GAAATTTGGG TATACCGTAG AAGAGTTTAC ATCAGGAAAA
CTTCTTTATG GTAATGTCAT ACACCCTGAT GACCTGGAGA GAGTGGAAAG AGAACTCTTG
AGAAGGATAG ACGAAGATTA CGTGGATTTT TCCCAGGAGT ACCGTATCCT GACTAAGTCA
GGCGAAGTAC GCTGGGTTGA AGAAAGAACT TTTATTGAAG CCGATGAAAA TGGGATTGTA
AAGTACCTTA AGGGAATAAT CCTGGATGTC ACTGAGCGGA AGAGGAAAGA AAAATTGCTC
TATATCCAAA GAGACCTTGG AATCGCACTC AGCACTTCCA ATTCCCTGAA CGAAACTCTT
GAGAAACTGC TGGATTCCTG CCTCCAAATA GATGAAATCA ATGCAGGAGG CATTTATCTT
ATCGATGAAG AAACAGGAGA TATGAAGCTT GCCATTCACC GTGGTTTTTC TCCTAATTTT
GTCGAGCATG CCTCGTATTA CAGTGCTAAT TCCCCCAATA CTAAACTTGT TATGATAGGG
CAGCCGGTTT ATAAACAGCA TATAGATCTG CTTCTCACGT CAAGAGATGA TGCGCTCAGG
CATGAAAATC TCAGGGCTAC CGCAATTATC CCCGTAAAAT CAGGAAAAAA GGTTATTGCA
GCTTTTTGCC TTGCTTCGAG CCTTGAATTC GAGATTCCAG ATAGCGTGCG CACTGTCATC
GAAACCATTG CAACGCAATT TGGAGTCTTC ATCTCTCGTA TCCGCCTGGA AGAGAAACTA
AAGGAATGCA GGAGGAAGAG AAAGTCTTAA
|
|---|
| Protein sequence | MSKVVSNSAK KGKSRQKACK YMNEAALCNA LEMAKELISV INKVPVTVFL WRPEKYWPAE
FVSENIKKFG YTVEEFTSGK LLYGNVIHPD DLERVERELL RRIDEDYVDF SQEYRILTKS
GEVRWVEERT FIEADENGIV KYLKGIILDV TERKRKEKLL YIQRDLGIAL STSNSLNETL
EKLLDSCLQI DEINAGGIYL IDEETGDMKL AIHRGFSPNF VEHASYYSAN SPNTKLVMIG
QPVYKQHIDL LLTSRDDALR HENLRATAII PVKSGKKVIA AFCLASSLEF EIPDSVRTVI
ETIATQFGVF ISRIRLEEKL KECRRKRKS
|
|---|
| |