| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2929 |
|---|
| Symbol | |
|---|
| ID | 3626514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 3748882 |
|---|
| End bp | 3750297 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637701774 |
|---|
| Product | surface layer protein B |
|---|
| Protein accession | YP_306404 |
|---|
| Protein GI | 73670389 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0075773 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00586153 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGATGGAG GGATTAAAAT AAGTAAATTA ATTACTTTAT TGTTAGTTTT TTTTATCCTG
ATATTAAGCT CTGGTATTGG AACTGCAAAT GAAATCTTTG TCAATTCAGG AGAGTCCATA
CAGGCTGCTG TAAACAGTGC GGTTTCAGGC GATGTGATAA TTGTAAAGCC TGGAACCTAT
ACCGAGAACA TCAATGTAAC CGTACATAAC CTGATAATAA AATCAGAGTC AGGAAATCCT
GTAAATACAA TAATAATGGC TAAAAACCCG GCCTTAGATG TGTTCAATGT AGAGTCAAAC
AAAGTTACGA TTAGCGGATT TAAAATAATG GAGGCAAATA AAGACCATGC AGGGGTCTAT
ATGTATAAGT GCAAAAACTG CACCATTGAA AATAGTAGAT TGCTGAATAA TACTATTGGA
GTACATCTAA AGAATTCGGA TTATAACTCA ATTCTTGATA ACCTGATTGG AAAAAGCGAT
AAGGGAGTTG TCACTGAGCA GTCCAATTAT AACACAATCT CCGGAAACCG GGCTTCAAAA
AACAGGTACG GGTTCTATGT TCCAAATTCT GCGGGGAATG TAATCTCAAA TAATACGCTC
TCGGAAAACA AAGATTACGG AATCGTGCTT TCAACTGGAG CAGGCAATAC CCTCTCAGAA
AATAATGCTT ACGATAACGG TAGAGGCATC TACCTGGGAA ATTCGGATAA CAATAAGATT
TCAAGCAATA CTATTACTTC AAATGAGGTT TTTGGGCTTT TTGTCTGTCC CAAAAGTGAC
AAGAACCGCA TCCTTAATAA CTACTTCAAT AATACTGTCA ATGCCGTACC TAATAACGGA
ACCGACAACA TATATTATAT AGAAAAAACC CCAGGCACTA ATATTGTCGG TGGGCCTTAT
CTTGCAGGAA ACTACTGGGC ACAACCCAAT GGAACGGGCC CCTCGGAAGT CACGCCTGAT
GCAGATGGGG ATGGCATTGC CGATAAGGTC TACAGGCTTG AAAACAGTGA TTACGTCGAT
CGCCGGCCTC TTGTGGCTGT TAAAGTAAAG AAGCCGATTC TTCCTGTTGC AAATTTCAGT
ACCAATGCAA CTAGTGGTCA TCCTCCTCTT TCAGTCCAGT TTGCCGATCT TTCAAAAAAT
GAAACCGAAA GAAACTGGGA CTTTGAAAGC GATGGAAACA TTGATTCGAC GGACGAAAAC
CCGGTTTATA CCTATACAGA GCCTGGAACC TATACCGTTA ACCTTACTGC AAGTAACGAA
AACGGGACTG CTTCAAAAAA TTACATAATA GTCGTTCTTG AAGGACGCGA GACTCAAGAA
TCTGTCTGGC AGAATAAAAT TGCGAGTTTA CCTGGCTTTG AATTGATTTA TGGAATTTTT
GGTTTACTTG CAGTCTTCCT GTATAGAAAA AGATAA
|
|---|
| Protein sequence | MDGGIKISKL ITLLLVFFIL ILSSGIGTAN EIFVNSGESI QAAVNSAVSG DVIIVKPGTY
TENINVTVHN LIIKSESGNP VNTIIMAKNP ALDVFNVESN KVTISGFKIM EANKDHAGVY
MYKCKNCTIE NSRLLNNTIG VHLKNSDYNS ILDNLIGKSD KGVVTEQSNY NTISGNRASK
NRYGFYVPNS AGNVISNNTL SENKDYGIVL STGAGNTLSE NNAYDNGRGI YLGNSDNNKI
SSNTITSNEV FGLFVCPKSD KNRILNNYFN NTVNAVPNNG TDNIYYIEKT PGTNIVGGPY
LAGNYWAQPN GTGPSEVTPD ADGDGIADKV YRLENSDYVD RRPLVAVKVK KPILPVANFS
TNATSGHPPL SVQFADLSKN ETERNWDFES DGNIDSTDEN PVYTYTEPGT YTVNLTASNE
NGTASKNYII VVLEGRETQE SVWQNKIASL PGFELIYGIF GLLAVFLYRK R
|
|---|
| |