| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2876 |
|---|
| Symbol | |
|---|
| ID | 3627257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 3685304 |
|---|
| End bp | 3688114 |
|---|
| Gene Length | 2811 bp |
|---|
| Protein Length | 936 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637701726 |
|---|
| Product | sensory transduction histidine kinase |
|---|
| Protein accession | YP_306356 |
|---|
| Protein GI | 73670341 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain
[COG3920] Signal transduction histidine kinase
[COG4936] Predicted sensor domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.558657 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAG ACCTAGAGTT ATTTCCGGCA ACAAACCCGA ATCCTGTACT TAGTGTGGCA
ACTGATTGCA CTGTTCTTTA CTCAAATAAA GCTGGTGAAC CCCTATTATA TGAGTGGGGT
GTGGCAGTAG GAGGAAAACT GCCGTCCTAT GTAAGAAGTA TCGTGAAGAA AGTAATTTCC
CTAAATATAC CTGAAAAAAT AAAAGTTGAA ACGGAAAAAA TAGAATATCT TGTCGGGTTT
TACCCTGTGC CTGAAGAAAA ATGCGTAAAC ATTTATGGAT TCGATATAAG TGACTGCGAT
ATAAGTAACT GGAGAGAATT TGAAGAAAAA CTTCCGGAAA GTGAAGCTGG TGAGGTGGCA
AACCTTGAGC TAGCTGATAT TATTGATGTG CCAGCAATCC AGTCTCTCAT GGATGATTTC
TATAGGCTTG TTCACATTCC CATGGGCCTG ATCGATCTCA AAGGCAATGT TCTTGCAGGC
GTCGCCTGGC AGGATATCTG CACAAAATTC CATAGAATTC ACCCCGAAAC CTGCAAAAAC
TGCATAGAAA GCGACATAAA GCTATCCGTA GGCGTTTCCC CTGGAGAGTT TAAGCTTTAC
AGGTGCAAAA ACAACATGTG GGATGTAGCG ACCCCAGTCA TGGTAGGCGG TAAGCACGTT
GCCAATATTT TTTCAGGACA GTTCTTTTTT GAAGACGAAC CTGTGGACTA TGAGCTTTTC
CGATTTCAGG CCAGAAAATA CGGTTTCAAC GAGGAGGAAT ACATAGTAGC ATTTGAAAAA
GTTCCACGGT TAAGTAAGGA AGCTGTAAAC ACAAAAATGG CTTTCTTCGT GAAACTTGCC
AACATACTCT CACAATTAAG CTACAGTAAC TTCAAGTTTT CCCAGTCACT TGCAGAAAGC
GAGATCCTGG TGAATAAGCT AGAGAAAAAC AGGGAAGATC TCGATCGTGC TCAAACAGTG
GGAAATATCG GAAGTTGGAG TCTGGATGTG CATAAAAACG AACTAACCTG GTCTGATGAA
AATCACCGTA TCTTTGGTAT CCAAAAAGGC ATCCCTTTAA CCTATGAAAC TTTTCTTTCA
AAAGTTCATC CAGATGATCG AGAATATGTT GATAGGAAAT GGAAGGCAGG GTTAAAGGGC
GAACCATACG ACATCGAACA TCGAATTTTT GTAGACGGTC AGATCAAATG GGTGCGTGAA
AAAGCATATA TTGAATTTGA CAAAGACGGG ATGGTAACCG GCGGCTTTGG TATAACACAG
GATATAACCG AGCGCAAAAA ATCAGAAGAA GCCCTTAAAA GAGTACATGA TAGTTTAGAA
GCAAAAGTTA AAGAACGTAC ATCAGAGCTT GAAAAAGCTT ACGAATCACT GATGGAGGAA
GAGAGAAGAC TCTCTGAAGC CCAAAAAATA GCTCATGTTG GAAATTGGGA CTGGGATCTT
AAAACCGATG AAGTTTACTG GTCTCATGAG ATGTGCCGTA TCTTTGGGTG TGCCCCCCAA
AAGTTATTTC ATACACACAG TGAGCTTTTA AACTTTATAC ATCCCGAGGA TCGAAGCTAT
GTGGACAATG TCGTTAAAAG TACTTTAAAT GGAGGGTCCT TTAGCATTGA TCACAGGATT
ATCTCAGCTC AAGGCGAAGA GCGTATAGTC CACGCACAGG GTGAAGTTGT TTTTGATGAG
AAAAAAAGTC CAATTCGATT GAGAGGAACA ATTCAGGACA TTACAGATCA CGAGAAAGCA
GAGGAGAAGA TCAGGATATT AGCGGATGCT GTGGAATCAT CAAATGATGC TATTGTAACA
GAGTCTTTCG ATGGTACTAT TATCAGCTGG AATAAAACGG CAGAGCAGAT TTACGGTTAT
TCCGCCGAAG AAATTCTGGG CAAAAATGTC TCAATACTGG AACCGGATAA TCTTAAAGGA
GAAATAAAAA AGATAATCGA AAAGGTTAAA CATGGAGAAA AAGTCCATCA TTACAGAACT
TTACGGCTAA AAAAGGATGG TACAACAACA AATGTTTCAA TAACTTATTC TCCAGTTTTT
GATGCTTTTG GAGAGCTGAA GGCTATCTCA GCTATTGCAA GAGATATTAC TGAGCAAATA
AATACGGAAA AAATACTGGC AAAAGCCGAA GAAGCCAGAA AAAAAGAAAT CCATCACCGA
ATTAAGAATA ATCTGCAAGT GATCTCTTCT CTTCTTGACC TGCAGGCTGA AAAGTTCAGA
AGCAGGGAAT GTACTGAGAA TGAGGAGGTT CTTAATGCTT TCAGAGAAAG TCAAGACAGA
GTAATGTCAA TTGCCCTTAT CCACAAAGAG CTCCACGAAG GCAAAGTAAC CGATACATTA
AACATCTCGG CATACCTTGA AAGGCTTGTT GAAAATCTTT TCCAGACTTA TAGAGTTGGA
AATGTCAATA CGAGCCTGAA ACTCGAAGTG GAAGAAAACA TTTTCTTTGA TATGGATGTC
GCTGTTCCAC TGGGAATAAT CATTAACGAA CTTGTTTCAA ATTCTCTGAA GTACGCATTT
TTAGGTAAAG ACAATGGAAG AATTCAAATC AAACTTCACA GGGAAGACTC GACAGAACAC
GTAAAAAAAG AGCAGGGACG CACCGAAGAA AATTATAATG GCACTGATTT TACTTTAATA
GTCTCGGATA ACGGGATAGG TATTTCTGAG AAGTTTAATT TAGAAGACTC CAATTCTCTT
GGCTTACAGT TAGTGGAAGT CCTGGTAGAC CAGTTAGGGG GCGAAATTGA ACTAAAAAGA
AGTTCCGGAA CTGAATTTGT TATAAGGTTT AAAGTACCAG CGCAAAATTG A
|
|---|
| Protein sequence | MTKDLELFPA TNPNPVLSVA TDCTVLYSNK AGEPLLYEWG VAVGGKLPSY VRSIVKKVIS
LNIPEKIKVE TEKIEYLVGF YPVPEEKCVN IYGFDISDCD ISNWREFEEK LPESEAGEVA
NLELADIIDV PAIQSLMDDF YRLVHIPMGL IDLKGNVLAG VAWQDICTKF HRIHPETCKN
CIESDIKLSV GVSPGEFKLY RCKNNMWDVA TPVMVGGKHV ANIFSGQFFF EDEPVDYELF
RFQARKYGFN EEEYIVAFEK VPRLSKEAVN TKMAFFVKLA NILSQLSYSN FKFSQSLAES
EILVNKLEKN REDLDRAQTV GNIGSWSLDV HKNELTWSDE NHRIFGIQKG IPLTYETFLS
KVHPDDREYV DRKWKAGLKG EPYDIEHRIF VDGQIKWVRE KAYIEFDKDG MVTGGFGITQ
DITERKKSEE ALKRVHDSLE AKVKERTSEL EKAYESLMEE ERRLSEAQKI AHVGNWDWDL
KTDEVYWSHE MCRIFGCAPQ KLFHTHSELL NFIHPEDRSY VDNVVKSTLN GGSFSIDHRI
ISAQGEERIV HAQGEVVFDE KKSPIRLRGT IQDITDHEKA EEKIRILADA VESSNDAIVT
ESFDGTIISW NKTAEQIYGY SAEEILGKNV SILEPDNLKG EIKKIIEKVK HGEKVHHYRT
LRLKKDGTTT NVSITYSPVF DAFGELKAIS AIARDITEQI NTEKILAKAE EARKKEIHHR
IKNNLQVISS LLDLQAEKFR SRECTENEEV LNAFRESQDR VMSIALIHKE LHEGKVTDTL
NISAYLERLV ENLFQTYRVG NVNTSLKLEV EENIFFDMDV AVPLGIIINE LVSNSLKYAF
LGKDNGRIQI KLHREDSTEH VKKEQGRTEE NYNGTDFTLI VSDNGIGISE KFNLEDSNSL
GLQLVEVLVD QLGGEIELKR SSGTEFVIRF KVPAQN
|
|---|
| |