| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2844 |
|---|
| Symbol | |
|---|
| ID | 3627012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 3634896 |
|---|
| End bp | 3637901 |
|---|
| Gene Length | 3006 bp |
|---|
| Protein Length | 1001 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637701694 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_306324 |
|---|
| Protein GI | 73670309 |
|---|
| COG category | [R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system
[COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0777438 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0344466 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTGGGTAA ATAAATTAAC CGTTTTTTCA GCGGTTGCTA TATTTCTTAT TACTGTGGTT
TATAGCCCTG CATCCGCCAG GGAGATTACA GTAGATAATA ATGGCTCAGG TGCAGATTTT
CGATCGATTC AGGAAGCCGT AAACAATTCG TCTTCAGGAG ATACGGTTCT TGTCATGCCT
GGAACTTATA ACGAAAATAT AATTGTTAAC ATTAACTCGC TGACTATTAA GTCGAAATCA
AAAAACCCTG AGGTACTGGT AAAGTCTCTA GAGGAAAACA AAAGCGTTTT TCTTATAACA
GCTAGTAACG TAACTCTGAG CGGCTTCAAT ATAACAGGAG CTAAAGGAAG TTACACTTAT
TATCCATCTG GGATTTGCCT TAAGAATACT AGAAACTGCA AAATTACAGG CAACACTCTA
TTTGAAAACT ATCTGGGAGT GTGCCTTGTT AATGCTGATT ATAATATAGT TTCGAAAAAC
TTCCTATTCA ACAGTTCTAT TTCTCTAAAT GAAGGCAGTA ACATGAATAA TCTGAGAGAC
AATGCACTTG AAGAAGGGCC CATTTCTCTG TCATACTCCA GGTATAACAC AATCTCAGAA
AACTCTCTCT TCAATGGTTC TATTTCTATG GGTGAAAGCG GCATGAATAA CCTGACAAAC
AATACCATTG AAAAGGGCTC CATTTTTCTG GCAGCATGGT GCTCACTTAA CCTGATATCT
AAAAATAAGA TCTTAAACGG ACAGGGTATA AGTATTGCCT GTTGTGGGGG AGGTGATAAT
ATATCTGATA ATGTGATTTC GAATTGCTCC ACAGGGGTTT CTACATATGA TCACGGCATA
GATGTTATTA ACAATAGCAT TATAGACTGT TACCGTGGGA TATATATTGC TCAGTCGCCT
TCCAGAATTC ATAATAATAC AATCCTGAAC TGCAGCACTG GAATTACTGT GATGGATTCT
ACTACTGATA TATCAAATAA CATAATAATC TCCAGTGCAA AATGCGGGCT CTCTATTCCA
GACCGAGAGT TTGATGAACG AGTATATAAC AACTACTTTA ACAACACTAT AAACGTAAGG
CTGGGAAATC ATGACAAGTA TACCTGGAAC AGTTCACGTG TCTCAGGTAC TAATATTGTA
GGCGGGCCAT ATTTGGGTGG CAATTATTGG GCAAACCCGA ATGGAACCGG CTTTTCTGAA
GCCTGTACGG ATTCAGATGG AGATTGGATT TGCGATTCGC CTTACAATCT CAATGGAAGC
GATTTCGATT TTCTTCCTCT TGCATCTATA TCCAGAACAC AGAATCCACC TGTTGCAAAC
TTCAGTATCA ATATCACACA GGGACTTGCC CCTTTTTCAG TCCAGTTCAC AGATTCTTCA
CAACATGCAC TTCTATGGAA CTGGGACTTT GACAATGATG GAAAATCAGA CTCTACGGAA
AAAGATCCAG TTTATGAGTA TAAAGCTCCA GGAAATTATA CTGTTAATCT GACAGTCAGC
AACGCAAAAG GTACGGCCTC GAAAGCTCAG AAGATTATTG CACAGGATGC AAAGAGTCTT
CCTGTAGCCG ATTTCAGTGT TAATACTACA AAAGGCCAGG CCCCTCTTTC TGTTATTTTT
ACTGATCTTT CGCAAAATGT AGCAAAAAGA GCATGGGACT TTAATAATGA TGGTATTACT
GATTCTACAA ACAAAACTGC AGTTTATACC TATACTTTTC CGGGAACCTA TATTGTTAAC
CTGACCGTAG GCAATTCAAA AGGATCTTTC TCAAAGTTAT TTCCGATAAC AGTATCTCCT
GTACGGCGTG TAGATGGGCA ACTTATCCTT ACTGAATATC AGATCACTAC CAACGGAGTA
AACCCGAGTC GACCTGCTAT TTATAAGGAT AGAATTGTAT GGTCGGATAA TCGCAATGGA
AATCCTGATA TTTATACGTA CGACCTTTCC ACTTCCATGG AAACTCAAAT AACTACAATC
AAATCATACG ACTATTCCCC TGAGATCTAT GGTGACAGAA TAGTGTGGAC TGATTATCGT
AATGGAAACG GAGATATTTA CCTGTACAAC CTTTCTACTA AAAAGGAAAC TCAGATCACT
ACTAATGAAT CCGCCTCAAA TCCTAAAATC TACGAAGATA AAATAATCTG GGTAGATTAC
CGCAATGGTG ATATTCAAAA CTTCTCAAAT CCCGATATTT TCATGTACGA TCTCTCTACT
CATAATGAGA CTCAAATTAG CAGCAGTGCC TCAGATGATT TTTCTCCTGA CATATATGGA
GACAGGATAG TGTGGTGCGC TAAACGACAT GAGTCTGAAA ACTCCAGTAT CTACATGTAT
GATCTTTCTA CTTCAAAGAA TACAAAAATA ACCACCAATG AATCACAACA TATGAATCCT
GTAATCTATG GTGATAGGAT CATCTGGGAA GATTACCTTA ACGAAAAACG CAGTATACAC
ATATATAATC TCTCCACTTC TACAGAAACC CAGATTGCCA CCAGTCAATC AGGCTATCAT
TGGCCTGCTA TTTATGAAAA CAGAGTCTTG TGGGCAGATT ATCGTAATGG TCATATAGAT
ATCTATATGT ATGATCTCTC CACTCAGAAG GAAACTAGGA TAACCACTAA TGGATTATCA
TTTGCAGAGT CTGCTATTTA TGGAGACAAG GTTGTGTGGA CAGGCAACAT CAATGGAAAA
AGCAATATAT ACATGTGCAT TATTTCGGAA GAGGGAAAGA TACCAGAACC ACCCATTCCA
GACTTTTCTG CATTTCCTAC TTCTGGAGGA GCACCATTAA AAGTATTATT TACTGACAAT
AGTACAGGTG GACCGACTTC CTGGCTCTGG GACTTTGGAG ATGGCATTAA TTCAAAGCAT
GCTTTAAATG CAACTCATAC ATTTAATGAA CCAGGAAAGT ATAATGTAAG CCTTATAGTA
AACAATGCAA ATGGTAGCGC CACTAAAACA ATACCTGAAT GTATTACAGT TTTCAAAAAG
GAATGA
|
|---|
| Protein sequence | MWVNKLTVFS AVAIFLITVV YSPASAREIT VDNNGSGADF RSIQEAVNNS SSGDTVLVMP
GTYNENIIVN INSLTIKSKS KNPEVLVKSL EENKSVFLIT ASNVTLSGFN ITGAKGSYTY
YPSGICLKNT RNCKITGNTL FENYLGVCLV NADYNIVSKN FLFNSSISLN EGSNMNNLRD
NALEEGPISL SYSRYNTISE NSLFNGSISM GESGMNNLTN NTIEKGSIFL AAWCSLNLIS
KNKILNGQGI SIACCGGGDN ISDNVISNCS TGVSTYDHGI DVINNSIIDC YRGIYIAQSP
SRIHNNTILN CSTGITVMDS TTDISNNIII SSAKCGLSIP DREFDERVYN NYFNNTINVR
LGNHDKYTWN SSRVSGTNIV GGPYLGGNYW ANPNGTGFSE ACTDSDGDWI CDSPYNLNGS
DFDFLPLASI SRTQNPPVAN FSINITQGLA PFSVQFTDSS QHALLWNWDF DNDGKSDSTE
KDPVYEYKAP GNYTVNLTVS NAKGTASKAQ KIIAQDAKSL PVADFSVNTT KGQAPLSVIF
TDLSQNVAKR AWDFNNDGIT DSTNKTAVYT YTFPGTYIVN LTVGNSKGSF SKLFPITVSP
VRRVDGQLIL TEYQITTNGV NPSRPAIYKD RIVWSDNRNG NPDIYTYDLS TSMETQITTI
KSYDYSPEIY GDRIVWTDYR NGNGDIYLYN LSTKKETQIT TNESASNPKI YEDKIIWVDY
RNGDIQNFSN PDIFMYDLST HNETQISSSA SDDFSPDIYG DRIVWCAKRH ESENSSIYMY
DLSTSKNTKI TTNESQHMNP VIYGDRIIWE DYLNEKRSIH IYNLSTSTET QIATSQSGYH
WPAIYENRVL WADYRNGHID IYMYDLSTQK ETRITTNGLS FAESAIYGDK VVWTGNINGK
SNIYMCIISE EGKIPEPPIP DFSAFPTSGG APLKVLFTDN STGGPTSWLW DFGDGINSKH
ALNATHTFNE PGKYNVSLIV NNANGSATKT IPECITVFKK E
|
|---|
| |