Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A2740 |
Symbol | |
ID | 3624504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | - |
Start bp | 3481447 |
End bp | 3482139 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637701593 |
Product | TetR family transcriptional regulator |
Protein accession | YP_306223 |
Protein GI | 73670208 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0291953 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000390237 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGTCGAAGA TATTGCCCGA GTATAGGGAA AAGGCAAAAA AAAGAATTAT TGAAGCAGGG CTGGAGGTAA TGTATGAGAA AGGATACTGT AACACTACAA TGGAAGATAT CGCTCGCTGC CTTGATGTCA GCAAACCGGC CCTCTATCGA TACTTTAAAA ATAAGGATGA ATTAGTCATA GAAAGCGCAA ATTATCTGCA GACACAGTAC CGTGATATAA AAACAGGCTG TAATTCTGAG TACCGTGATA TAAAAACAGG CTGTAATTCT GACATCTGCC CTGTTGATGC GTGGATAGAA ATCTTCGATC AGATAATGTC ACCTGATATT AAAATACATG CATTATATTT TGAAATTCTG GGGATGACAG TACACAAACC TGAGGTCCAG AAAAGATCAA TCGAAGGCAT GAAGCGTGGT CTTGACCAGC CAACTCATGA AATTGAAGAA CAACAGCAGA AAGGCCTTAT TCCATCCAAA ACCGATCCGC GTACCCTTGC AATCGCTCTT GTGTCATTGT TTAATGGAAT GCGGGTTCTT ATCCTTCTTG GCGTTGATTG GAAAGAAGTC CGCTCTCGAT GGATCGAAAT ACTCCGAAAT TTATTTGGAA TAACAGAAAA AGGAGGGCAG CAGGCAGAAT GCCCCAGGGA TTGTAAAAGG TTTGAGGATT GTAATCCTGC ATCAGAAATA TGA
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Protein sequence | MSKILPEYRE KAKKRIIEAG LEVMYEKGYC NTTMEDIARC LDVSKPALYR YFKNKDELVI ESANYLQTQY RDIKTGCNSE YRDIKTGCNS DICPVDAWIE IFDQIMSPDI KIHALYFEIL GMTVHKPEVQ KRSIEGMKRG LDQPTHEIEE QQQKGLIPSK TDPRTLAIAL VSLFNGMRVL ILLGVDWKEV RSRWIEILRN LFGITEKGGQ QAECPRDCKR FEDCNPASEI
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