| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2604 |
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| Symbol | |
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| ID | 3626788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosarcina barkeri str. Fusaro |
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| Kingdom | Archaea |
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| Replicon accession | NC_007355 |
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| Strand | - |
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| Start bp | 3296434 |
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| End bp | 3299217 |
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| Gene Length | 2784 bp |
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| Protein Length | 927 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637701463 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_306094 |
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| Protein GI | 73670079 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.010408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.426767 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTTTTA TGAATAATTT TTTAGAGTTG CAAGCTTCCT TATACAGTTT ATTTGTGTTT
ATTATGATGC TTATCATTAT ATCACTGTTT GTGTATTTAG TTATGTCTTA TTATGGAAAC
AGTACAGATA AAACCGAAAA GTTGAAAGGA TTTAAATATA AAAATATTAT TCTTTTTATT
ATTATATTAA CGATTTTTTT TGTTGCTATG TATTTTGTGC ATGAGAGCCC AATTGCCTGG
ATTGTAAGAG GAGATGCATT AGCTAATTCT GGTAATTATA AAGAAGCAAT AAATGCTTAC
GATAAAGCAA TTGAACTTGA TCCTCAAAAT CCAGAGGCTT GGAATAATAA AGGAGTTGCA
CTTTCCAATT TAAGTAATTA TGAAGAAGCA ATAAAAGCCT ATAATAAAGC AATTGAACTT
GACCCTCAAA ACTCGCTTTT CTGGTATAAT AAAGGGAAAA CTCTATACGA GTTAGGCAAG
CAAGAAGAAT CAACAAAAGC CTACAAAGAA TCACTAGAGG CTAGTGAAAA TGCAATTGAA
CTTGATCCTC GAAACTCGCT TGCTTGGTAT AATAAAGGGT CAGCTCTTCA GGAGCTAGGT
AATTACCAGG AAGCAATAAC AGCCTACAAT AAGGCAATTG AGATCTATCC GGAGTATAAA
GAAGCCTGGT ATAAGAAAGG ATTAGCCTTT TACAACTCAG GTAATTATGA GGAAGCAGTA
AAAGCCTGCA ATAAAACAAT TGAGCTTGAT CCTCAAAACC CACGTGTCTG GGCTAATAAA
GGAAATGCTT TGTCTAAATT AAATAGTTAC GAGGAAGCAA TTACAGCATA TAATGAATCA
ATTGAACTTG ATCCTCAAAA CTCAGTTGCC TGGAATGGTT TAGGATTCGC TGTAGCTAGT
TCAGGTAACT ACGAAGAAGC AATCAAATTC TACAACAAAG CAATAGAAAT TGATCCTCAG
AATTCAGAGG CTTTGAGTAA TAAAGGATTT GCTCTTTACA ATGTAGGTAA CCGCGAGGAA
GCGATAAAAG CTTTAGATAA AGCCATAGAA GTAAACCCTC AAAATGCAGT TGCCTGGTAT
GATAAAGGAT CGATTCTCAA AAATTTAGGT AATTACGAAG AGGCAGTTGA AGCTTTTGAC
AAAGCAACTG AATTAGACCC CAAAAAATCA TCTGCTTGGA ATAATAAAGG AAATGCTCTG
TCTAGTTTAG GGAACTATGA TGAGGCAATA AAAGCATACG ATAAAGCAAT AGAAATTGAC
CCTCAAGATC CAGGTCCATG GAATAATAAA GGAATTGCTC TGTCTAACTT AGGAAGTTAC
GAAGAATCGA TTAAAGCCTT TGATAAGGCA ATAGAGATTA ACCTTTCAAG TTCAGTTACC
TGGGCCAATA AGGGATTAGT TCTGTCCATA TTAGGAAATT ATGAAGGAGC AATAAAAGCT
TTTGATAAAT CAATAGAAAT TGATCCTCGG AATTCTATTG CCTGGGTTAA TAAAGGAAAT
GCCCTCTACA ATTCAGGTGA GTATGAGGGA GTAATAACAG CCTGTGATAA GGCAATTGAA
CTCGATCCTA AAAACTTAGA CGCCTGGACC AATAAAGGTA AAGCCCTGTC CAGTTTAGGT
GATTATGAAG AAGCAATAAA AGCTTATGAT AAAGCACTTG AGATCGAACC TCAAGACCCG
CTCACCTGGA ATAATAGAGA AATTGCTTTT GGTCATTTAA ACAATTACGA AGAAGCGTTA
CGAGCTCATA ATAGAGAGAT AGTAAGCGAT TCCGAAGATC CAGAAGTCTC ATGGAACGAT
AAAGGGTTAG CTCTTTACTA TTCAGGTAAT TACGAAGAAT CAGTAAAAGC CTATGATAAG
GCAATTGAAC TTGACCCAGA ATATGCGGAT GCCTGGTTCA ATAAAGGAAA TTCTTTTTTT
AGTTTAAAGA ATTACGAGGA GGCAATAAAA GCATATGACA AAGCGATTGA ACTTAAACCT
CAAAATTCAC TTGCCTGGAA TAATAAAGGG TTAGCTCTCA ACAATTCAAG CTATTACGCA
GAGGCATTAA AGTCATACGA TAAGGCGATT GAACTTAACT CTCAGGATTC AGCTGCCTGG
AATAATAAAG GGAACACTCT TTCTAGTTTA TATGATTACG AAGGAGCATT GAACGCCTAC
AATAAAGCAG TTGAAATTAA CCCCCAATAC TCAGATGCCT GGTACAATAA AGGGAATACT
CTTTGTAGCT TAGGCCGTTA TGAGGAAGCA GTAACTGCCT TTAATAAGAC ACTTGAAATT
GACCCTCATA ATTCATTTGC CTGGTGTAAT AAAGGAATAG CTCTGTCCAG TCTTGGTAAT
TACGAAGAAG CAATGAAATC TTTTGATAAA GCACTCGAAA TTGACTCTCA AAATTCACTT
ATTTGGTCTA ACAAAGGACT AGCTCTTTTC GAATTTGGTA AGTATGAAGA AGCAGTAAAA
GCTTATAATA AAACAATTGA GATTGATCAA AGTAATACAG AAACTTGGAA TAATAGGGGA
TCAGCATTTT TCTTGATAGG TAACTACGAA GAAGCGATGA AAAACTACAA TAAAACAATT
GAACTTGACC CTGAGTACTC ACTTGCCTGG TATAATCGTG CATGTTTGTA TTCTCTTATC
AATGACAAAG AGCAGTCAAT ATCTGATTTG AAGCGCGCTA TTGAAATCAA TCCGGCGTAC
AAAGAAATGG CAAGAGTAGA CAGTAAATTT GAACATTTAT GGGATAATGA AGAATTTAAG
AAATTGTTAA ACATCACTGA GTAG
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| Protein sequence | MSFMNNFLEL QASLYSLFVF IMMLIIISLF VYLVMSYYGN STDKTEKLKG FKYKNIILFI
IILTIFFVAM YFVHESPIAW IVRGDALANS GNYKEAINAY DKAIELDPQN PEAWNNKGVA
LSNLSNYEEA IKAYNKAIEL DPQNSLFWYN KGKTLYELGK QEESTKAYKE SLEASENAIE
LDPRNSLAWY NKGSALQELG NYQEAITAYN KAIEIYPEYK EAWYKKGLAF YNSGNYEEAV
KACNKTIELD PQNPRVWANK GNALSKLNSY EEAITAYNES IELDPQNSVA WNGLGFAVAS
SGNYEEAIKF YNKAIEIDPQ NSEALSNKGF ALYNVGNREE AIKALDKAIE VNPQNAVAWY
DKGSILKNLG NYEEAVEAFD KATELDPKKS SAWNNKGNAL SSLGNYDEAI KAYDKAIEID
PQDPGPWNNK GIALSNLGSY EESIKAFDKA IEINLSSSVT WANKGLVLSI LGNYEGAIKA
FDKSIEIDPR NSIAWVNKGN ALYNSGEYEG VITACDKAIE LDPKNLDAWT NKGKALSSLG
DYEEAIKAYD KALEIEPQDP LTWNNREIAF GHLNNYEEAL RAHNREIVSD SEDPEVSWND
KGLALYYSGN YEESVKAYDK AIELDPEYAD AWFNKGNSFF SLKNYEEAIK AYDKAIELKP
QNSLAWNNKG LALNNSSYYA EALKSYDKAI ELNSQDSAAW NNKGNTLSSL YDYEGALNAY
NKAVEINPQY SDAWYNKGNT LCSLGRYEEA VTAFNKTLEI DPHNSFAWCN KGIALSSLGN
YEEAMKSFDK ALEIDSQNSL IWSNKGLALF EFGKYEEAVK AYNKTIEIDQ SNTETWNNRG
SAFFLIGNYE EAMKNYNKTI ELDPEYSLAW YNRACLYSLI NDKEQSISDL KRAIEINPAY
KEMARVDSKF EHLWDNEEFK KLLNITE
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