| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2506 |
|---|
| Symbol | |
|---|
| ID | 3625699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 3161834 |
|---|
| End bp | 3163339 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637701368 |
|---|
| Product | exosome complex exonuclease 1 |
|---|
| Protein accession | YP_305999 |
|---|
| Protein GI | 73669984 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0689] RNase PH |
|---|
| TIGRFAM ID | [TIGR02065] archaeal exosome-like complex exonuclease 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.118322 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.461906 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATA AACCTGAAAA ATTAATCACT GACGATGGGC TGCGCCTTGA CGGGAGGCAT
GCGGATGAAA TCAGGCCCAT GAAAATAGAG ATCGGCGTTC TTTCACGAGC CGATGGTTCA
TGTTATCTTG AATGGGGAAG GAATAAGGTC CTTGTAGGCG TATTTGGTCC TAGGGAAGCT
CACCCCCGTC GTTCACAGCG CGCAGATACT GCAGTTATCC GTTATAAATA TAATATGGCT
TCTTTTTCCA CTGAAGACCG AGCTAGGCCT GGACCTAGCA GACGGAGTAT TGAAATTTCT
AAAGTTTCCA GGGAAGCTTT TGAGCCGGTA ATTATGGCAG AGCTCTTCCC GAAAACTGCA
ATCGATATTT TTGTGGAAAT ACTTCAGGCT GATGCAGGGA CAAGGACAGC AGCAATTAAT
GCTTCAAGCA TAGCGCTTGC AGATGCAGGC ATTCCTATGA AAGGCCTGGT TACTTCCTGT
GCTTTTGGAA AAGTTGACGG GCAGATAGTG CTTGATCTTA ACAAAGAAGA GGACAATTAT
GGCGAGGCTG ATTTTCCTGT TGCAATGACT CAGGATGGAG AAATTACCCT GCTCCAGATG
GATGGAAATC TAACTACTGA TGAAATTAGA AAAGGCTTCG AGCTTGTTAA GAAAGGCTGC
AAGGAAATCC TTGAAATTCA GCAGGCAGTG TTGAGAACGA AGTTTGAGAC TCCTGTTGAA
GAACCTGAAG CCAAAGCCGC TGAAGAGGTT GAAGAGACTG AGCTTGAGGT TGTGGAAACG
GAATCTTCTC TAGAATATGC TCCCGAAGCA GCAGTTGTAG AAGAGATTAT TGAGGAAGCT
GAAGAGCCTG AGGAAGGTAT CTCTGAAGAA ACCGTTGAAG CCTGTGCTGT TAATAAAGAG
GCTCCAGAGT GTGAGGAGCT AGAAAAAGTC ATTAAAGATG CCGAGGCTGA AGTAGTAGAA
GGGGAAGTTA CAGAAAAAGT AGTTGAAGCA GAAGTCGAAG AAGAAGCTGA AGAAGAGGCA
TTTGAAGACA AAGCTGACTT TGAATCTTCT TTCGAGGCTT CTTTTGAGGA AGTTTCCGAA
GCTGAGGAGC TTGAAGAACC TGAATCTGAA GAAGTCGTTT CCGGGGAAGA AGCAGAAGTC
GAGTCCGAGA TCGAGGAATC TGCTGATGAA GAAGCTCAGC CTGAAGTAGA AACTCAGCTT
GAAGTAGAAA CTCAGCTTGA AGAGAAGGCA GAGGTTGAAG AAGAAACTCA GCTTGAAGAA
AAAGTGCAAC CTGAAGAAGA AGCCGGAATT GAAGAAGTAC AGCCTGAAGA AGAAGCCGGA
ATTGAAGAAG TTGCTTCAGA AGAAACTTTT GAATCCGAGC CAGAGATAGA GTCCGAAGCT
GAGTCCAAGA AAGAGGCTCC TGCCGAACAA ACCATAGAGG AGTCCGAAGA AGAAAAGTGC
AAAGGACCCT GGAAGGTAGT AAAAGACCCC TCTGAATCAG GAAGCAGAGG TGAAAACGAT
GAGTGA
|
|---|
| Protein sequence | MSDKPEKLIT DDGLRLDGRH ADEIRPMKIE IGVLSRADGS CYLEWGRNKV LVGVFGPREA
HPRRSQRADT AVIRYKYNMA SFSTEDRARP GPSRRSIEIS KVSREAFEPV IMAELFPKTA
IDIFVEILQA DAGTRTAAIN ASSIALADAG IPMKGLVTSC AFGKVDGQIV LDLNKEEDNY
GEADFPVAMT QDGEITLLQM DGNLTTDEIR KGFELVKKGC KEILEIQQAV LRTKFETPVE
EPEAKAAEEV EETELEVVET ESSLEYAPEA AVVEEIIEEA EEPEEGISEE TVEACAVNKE
APECEELEKV IKDAEAEVVE GEVTEKVVEA EVEEEAEEEA FEDKADFESS FEASFEEVSE
AEELEEPESE EVVSGEEAEV ESEIEESADE EAQPEVETQL EVETQLEEKA EVEEETQLEE
KVQPEEEAGI EEVQPEEEAG IEEVASEETF ESEPEIESEA ESKKEAPAEQ TIEESEEEKC
KGPWKVVKDP SESGSRGEND E
|
|---|
| |