| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2139 |
|---|
| Symbol | |
|---|
| ID | 3626093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 2701180 |
|---|
| End bp | 2702628 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 637701015 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_305648 |
|---|
| Protein GI | 73669633 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00876576 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.418146 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCAGAAC TCCAAAAATT TACATCTGAT GTTGGTGTTA CATTTATAGC TTCTGCTATA
GGTATGCTTT TAGGATTTCC TATAACCGTA CTCTTGGGAC GATATTTAGG AGCCGATGAT
CTGGGTCTTT ATCGAATGGT GAACACCATC TTTGGAAGTC TTATGCTGTT TGTCACTATT
GGAGTTCCTG CAGCTATTAT AAAATATGTG GCTGAATTTC GTGACAACGA AGAAAAAATA
GCACAAATTG TGTCTGCAGG TTTAATCACA TCTGTTTTAT TGGGATTATT TTCTTTCATA
TTTATTTATC TGAGTACAAA TTTATTCGCG AAATTATTTA ACATGCCTGA ACTTTCAGGC
CTATTGAAAA TTCTTGCTTT TGCGTTTCCA TTTTCTATTA TTAATAGTAC ACTTCTTGGT
CTTCTCAATG GCTTGAGAGA AATGACTAAA AACGCATGGG CCACCATAGT TCAGAGTACA
TTTTTACTAA TTTTTACTTT TCTCCTAGTT TTTAAGTACG GCGTCAATGG CGCAGTTACT
GGGATCGTAC TCTCATCTGC TCTGACAACA CTGCTTTTGA TATCTGTTCA AAAGATTTCC
AAGATAACAT TTTCCAATTT GTATGGAGCA GTTGTTCAGA TTATTGATTT TGGTTCAAAA
ACAGTGCTTG CAAATGCAAT AAATCTTATT AATTACCAGG CAGATATCCT GATGATTGGG
TACTTTATGA CCAAAACAGA TGTTGGAGTT TATAGCGTTG CAGTTATGTT TGCAAAGCTT
ATCTGGATTT TTCCCGATTC ACTTCAGAAA ATTACTTTCC CTCTTATCTC TGAATACCAT
GCAAAAAAAA TGAGCGATTC AATAACAACT GTAGTTGACA GATGTATGAA ATATAGTTGT
CTTTTTTTGA CTTTTTTCAC TACTTTTTTT ATTTTTTTCG GAGAAAAGGT TGTAGCTCTC
ATCTTTGGAG CTGAATTTGA ACTCTCATAC ATTCCATTAA TCATTTTGCT CATTGGAACT
CTTTTTTATG GAATAACTAA ATCTGTAGGG TCTATTTTTG CAAGCATTGG AAAAGTTAAT
CTTGTCTACA AAATTCCTTT GGTTTCAGCA ACATTTAACA TTATTATTAA TATAGTCTTG
ATCCCAACTT ATGGTATCAA TGGAGGAGCC CTTGCAACAA GTTTTTCTCT GATTATCAGT
ATGATTCTAA TGCTTCATTT TATGAAGTCC CTTTTAGAGA TTAAGTTTGA CTTCTGGTGG
TATTTTAAAA TCTTTGGTAT TACAATGTTT TTAATTCTTG TCTACCTAAT AATAGTAAAC
AAGTATAACA TATTACTTGG ATTAGTTTTA ATGGCTTTAC AATATGTTAT ATTTTTCAGA
TTTTTTATCC CAGTTGAGGA TAAACAAATA TTATATAAAG TAATTTCTAC CAATGGGAGA
AATTATTAA
|
|---|
| Protein sequence | MSELQKFTSD VGVTFIASAI GMLLGFPITV LLGRYLGADD LGLYRMVNTI FGSLMLFVTI
GVPAAIIKYV AEFRDNEEKI AQIVSAGLIT SVLLGLFSFI FIYLSTNLFA KLFNMPELSG
LLKILAFAFP FSIINSTLLG LLNGLREMTK NAWATIVQST FLLIFTFLLV FKYGVNGAVT
GIVLSSALTT LLLISVQKIS KITFSNLYGA VVQIIDFGSK TVLANAINLI NYQADILMIG
YFMTKTDVGV YSVAVMFAKL IWIFPDSLQK ITFPLISEYH AKKMSDSITT VVDRCMKYSC
LFLTFFTTFF IFFGEKVVAL IFGAEFELSY IPLIILLIGT LFYGITKSVG SIFASIGKVN
LVYKIPLVSA TFNIIINIVL IPTYGINGGA LATSFSLIIS MILMLHFMKS LLEIKFDFWW
YFKIFGITMF LILVYLIIVN KYNILLGLVL MALQYVIFFR FFIPVEDKQI LYKVISTNGR
NY
|
|---|
| |