| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2128 |
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| Symbol | |
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| ID | 3626082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosarcina barkeri str. Fusaro |
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| Kingdom | Archaea |
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| Replicon accession | NC_007355 |
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| Strand | - |
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| Start bp | 2683737 |
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| End bp | 2686304 |
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| Gene Length | 2568 bp |
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| Protein Length | 855 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637701006 |
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| Product | DNA topoisomerase, type I |
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| Protein accession | YP_305639 |
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| Protein GI | 73669624 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01057] DNA topoisomerase I, archaeal |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.572238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAATTG TCGCATTTGC AGAAAAGAAT AAGGCAGCAT CCCAGATTGC CAGCATCCTG
GGCGAGGGGG AAGTTGAGAG GATAACAGTT GAAGGGCTGC CTGTATACGA ATTCAAGTGG
AAAGGTGAAG AGTGGCTGGT AATGGGACTT TCCGGGCATA TTATGAATTA TGACTTCCCA
GAGCAGTATA ACAAATGGAA AGAAGTCAAT CCGGGTGTAC TTCTTGAAAT CGACCCGCAA
AAACTTGTAA CGCGAACTGA TTACGCTGCT GCGGTAAAAA ATCTGGCAAA AAGAGCAAAC
AAGATAGTCC TTGCCTGCGA CTATGACAGG GAAGGAGAAA ACATAGGATT TGAAGCCAAG
ACACTTGCAG AGAAAGTAAC AAATGTGCCG ATTGAAAGGG CACGTTTTTC GTCTCTCTCT
CCAAAGGAGG TTAAAAAAGC TTTTGAAAGC CTGATAAACC CGGACTATAA CATGGCAATG
GCTGCAGAAG CCAGACAGAT TCTGGACCTT AAAATGGGAG CAGCTTTTAC CCGCTTTGTC
ACGCTTTCAG TCAGGGAGAG GGCAAGAACA AAGGACATAC TTTCTATCGG TCCCTGCCAG
ACACCTACCT GCGGGTTTGT ATACGAAAGG GAAAAGGCAA TCCGGGCTTT TCAGGCAAAG
GACTTCTGGA AGATAACGGC TATTTTCTCG GCAGAAAGTG GAAAAGAAGG AGGAAAAGAA
GGAAGAAAAG AAGGAAGAAA AGAAGGAAAA AAAGAAAGAG GAGATTTTGA AGGTACTCAC
AGGGCAGGAA ATATTCACGA TAAAGAAAAA GCCGCTGAGA TCTTCAAACG ACTGAAAGGA
ACAAAGGAAG GGTTAGTTGC GAAAAAAACA GTAAAAGAAA CGAAAACCAG TCCTCCTAAT
CCCTTAAATA CTACGGAATT CCTCAAAAGG GCCTCCAAGT TTCTCGGAAT AAGCCCGGAA
CTTGCCCTTG AGGTTGCAGA ACAGCTTTAC CTTGCAGGGT TTACCAGCTA CCCCAGGACC
GAGACAAACA AATACGCTGA AGACTTTGAT TTCAAGTCCC TCGTCTTTGA CTTTGCACGC
CAGAAAGAGT ACAAGCCTTT TGCAGAGTCT ATCCTTATAG CTCCAATTGT CCCGAAAAAC
GGGGAGAAAG ATGCACACGA CCACCCCCCT ATCCACCCAA TCAGAGCGGC TTCAAGAGGA
GAAGTTAGCT CTGCAGTAAA TATCCCTCAG GCACCTGAAG TCTATAACCT TATAGCAAGG
CATTTCCTGG CAAACCTTAT GCCTGCAGCC GTCTTCGAGA AAACGCATCT CCATCTGCTC
GTAAATGAAG AGCCTTTTGA CTCGTCCGGA ACCGTGCTTA AGGATTCGGG CTGGCTCGAA
GCCTATCCCT TTGAAAATAA GAAGGATAAA CTTCTCCCGT TTGTGGAAGA AGGCCAGAAA
GTGGGCGTAA AAAAGCTCAG CAACACAAAA TCCAAAACCA GCCCGCCAAA GAAACTGACC
GAAGCCGAAC TTTTGACCCT TATGGACAAA AATGGAATCG GGACAAAGGC AACGGCTCCC
ACCCATATCG AAACAAATAA GAAGCGAGGA TATCTTGAGA CAAAGGGAAA AACAATCTCT
ATTCTCGATA CAGGCTTTAC CCTTATGGAT GGGCTCTCTC TGACCGTTCC GATTCTAGTA
AAACCTGAAA TAAGGGCAAA GATTGAAGCC CTTATTCAGG AAGTAGAAGA TGGAAAAAAA
GAGTTCGAAG CTGCTCTTTA CGAAGGCACA ACCCTAATCA AGGAGATGTA CGCCCAGCTT
GAAGCAAATA AAAAGGAGCT GACTTCAAGC ATAGCAGGCA CGATTAAGGA TGAAGCTGCC
CTCGAAGACA AGAAAAACTA CATTGGAACC TGTAAAGCTT GTGGGCATGT GTTAAGAATT
GTACAGACTG ATTCAGGCCG CTTTGTAGGC TGCACAGGCT ATCCTGACTG CAGAAACTCG
TATCCTCTGC CAAAAGCCGG AGCTTTGACC GTACTCAGGA GCAAGGAATG TAAAAAAGGA
GGAGTAGCTG TCCTGAAAGT CGGAAACAAA TATAACTGGG CTGTAGGCAT AGGCCCCTGT
TTTACCTGCG ACCTTGAAAA AGAATGTTAT CCCCCAGAAA CGGTCGGCCC CTGTCCGGAA
TGTGACGGAA GCATGTTCCT GATAAACTTT AAAGACACCC GATTTCTGGG CTGCACGAAA
CGCTGCGGAT ACACTCATTC AGTCCCGAAA ACCGGAAAAC TGACTATTCT TGACAAGACC
TGTGAAACCT GCGGCTGGAA GCTGTTCAGG TTAAAAGACG GCGACCGCCC TGAAGAAGAG
TTCTGTATAA ACCGGCGCTG CACGGAAGGC AGAAAGTACT GGAAAAAGCC AGGCAAAGGA
GCCGAAACAA GGATCAAGGA AAAGGCTTCT GTAAGCCGCC CTGCAGCAAG TTCAGTAGCA
AAACAGGCAG CAAGTTCAGC AACAAGTTCA GCAGCAAGCC CAGAAGTAAC CCAAGCAAAA
AGAAAAACTT CAAAAGTATC GGCTGCGGGC CTGAAAAAGA GTAAGTAA
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| Protein sequence | MTIVAFAEKN KAASQIASIL GEGEVERITV EGLPVYEFKW KGEEWLVMGL SGHIMNYDFP
EQYNKWKEVN PGVLLEIDPQ KLVTRTDYAA AVKNLAKRAN KIVLACDYDR EGENIGFEAK
TLAEKVTNVP IERARFSSLS PKEVKKAFES LINPDYNMAM AAEARQILDL KMGAAFTRFV
TLSVRERART KDILSIGPCQ TPTCGFVYER EKAIRAFQAK DFWKITAIFS AESGKEGGKE
GRKEGRKEGK KERGDFEGTH RAGNIHDKEK AAEIFKRLKG TKEGLVAKKT VKETKTSPPN
PLNTTEFLKR ASKFLGISPE LALEVAEQLY LAGFTSYPRT ETNKYAEDFD FKSLVFDFAR
QKEYKPFAES ILIAPIVPKN GEKDAHDHPP IHPIRAASRG EVSSAVNIPQ APEVYNLIAR
HFLANLMPAA VFEKTHLHLL VNEEPFDSSG TVLKDSGWLE AYPFENKKDK LLPFVEEGQK
VGVKKLSNTK SKTSPPKKLT EAELLTLMDK NGIGTKATAP THIETNKKRG YLETKGKTIS
ILDTGFTLMD GLSLTVPILV KPEIRAKIEA LIQEVEDGKK EFEAALYEGT TLIKEMYAQL
EANKKELTSS IAGTIKDEAA LEDKKNYIGT CKACGHVLRI VQTDSGRFVG CTGYPDCRNS
YPLPKAGALT VLRSKECKKG GVAVLKVGNK YNWAVGIGPC FTCDLEKECY PPETVGPCPE
CDGSMFLINF KDTRFLGCTK RCGYTHSVPK TGKLTILDKT CETCGWKLFR LKDGDRPEEE
FCINRRCTEG RKYWKKPGKG AETRIKEKAS VSRPAASSVA KQAASSATSS AASPEVTQAK
RKTSKVSAAG LKKSK
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