Gene Mbar_A1993 details

Gene Information

• Locus tag: Mbar_A1993
• ID: 3627929
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanosarcina barkeri str. Fusaro
• Kingdom: Archaea
• Replicon accession: NC_007355
• Strand: +
• Start bp: 2503952
• End bp: 2509861
• Gene Length: 5910 bp
• Protein Length: 1969 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637700871
• Product: cell surface protein
• Protein accession: YP_305507
• Protein GI: 73669492
• COG category: [S] Function unknown
• COG ID: [COG1520] FOG: WD40-like repeat

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.147717
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAAACAA TATATTATAT TTTTATAATT GTAATATTAA GTTCAATAAT GGTAGTGTCA 
CCAGCATCGG CAAAGACCTG GAATGTAGAC ACATCTCAGG AAATCTTAGA TGCTCTGGAC 
AATTGTGCAG ACGGAGATAC TATCTTTGTC ATGAATGGAG TATATGAGAT CGGCGATAAT 
AAAATTATTA AAGTGCCGAA TCTAACATTC AAGGGTGAGA GCAGAGATGG AGTGATTATT 
AAGTCCAATA GCCAGATATT AGGTGTAGGA GGAAGTAACG GGGCAGCACC AAATTGTGTA 
ATAGAGAATT TCACAGGAAT GCTAAAAACT GCTGGGCAAA AACCTAACGG AATCACAATC 
TACCAAAGTC CGGGTTGTAT CATTCAAAAT GTGGCAATTA ATGTTCCAAT GAGTCCAATA 
AGTATTAACG CTAATGACTG CATAGTTAGA AATTGTGTAT TTGATGATTG CTCTGATTCT 
GGTATTAGCA TTGGTGGAAA AAACAATACT TTTAAAAATA ATATTGTTTC AAATATTACA 
TCAGCTTTTT CTCTATATAT CCCAAATACA GCAACTGAAA ATATTATTGA AAACAATATT 
TTCAACAACT GCAATCCAGT TTATCTAAGA GGGGAAAATT CCACAGTTGC AAACAACACC 
TTCCTGAACG ATATAGGAGC AGCAATTGCA CTTTATTCAA CAACTGCAAA GAATAATACT 
ATAGTAAGAA ACAATATAGT TTCAAATGGA ATTGCTATAA ACGTTGTGAA AAATGCGGGT 
GATGGCAATA AAATATACCT GAACAATTTC GCGAACACTT CTGGTATGTC CGGTACACCT 
CCAGCTATAA CCTATTGGAA TTCCACTGAA CCCATGGAAT ACACTTACAA CGGTACAACC 
CACACCGGAT ACCTGGGCAA CTACTGGGGC ACTGCCTACT CAGGGTCTGA CAGTGACGGA 
AACGGAATCG GTGACATGTC TTATACTGTG CCTTCCAGTT TCGGCACTGA CTACGATCCG 
CTAATATCTT CAAATGAAAA CTACGGGAGT TCAGAAACGC ACGAAACGCC TTCAGCTCCA 
GTTGCAGGCT TTTCAGCAAC ACCGACTTCT GGCAATGCTC CTCTCACGGT TAATTTTACT 
GACCAGTCCA CAAATACACC TACATCCTGG CTATGGGACT TTGGAGACAA TTCGACTGAT 
ACCGAGCAGA ACCCCTCACA TGTATATGCA TCAGCCGGAA ACTATACCGT CAACCTTACG 
GTTGCAAATG CAGATGGAAG CGATTCTGAA GTAAAGACAG AGTGCATCGT CGTAAGCGAA 
CCACTTTCCG GAGCTCCAGT TGCCAATTTC ACAGCGAATG TGACAAGCGG TACAGCACCA 
CTGACAGTCC AGTTCACGGA CCTATCCTCA GGCGATGGAA TAACTTCCTG GGCCTGGGAC 
TTTGATTCAG ACGGAACCGT GGACTCAAAC GAGACAAACC CGAGCCATAT CTATAACAGC 
ACAGGAACTT ACACCGTCAG CCTGACGGTC ACAGGTGACG GGGGTTCCGA CACCGAAACA 
AAAACCAACT ATATTACGGT AAGCGAAACG GTTACTGAAT CCGGATGGTC TCAGTTCCAG 
AAAGACAGCT CTCATACCGG ATACACATTC AATTCTGTCC CAACCCAGGA CCCGGAACTC 
CTCTGGCAGA ATCTGACTTC TTCGGAGCAG GAACCCTGCG GGAGCGGAGG CATAAATGTC 
CCGCCAGTGA TTTCCGGAAA TACGGTTTTC GTAACTGCCG GAAACGCTTC TGTCTGGGCA 
TTTAACAAAG AGACCGGAGA CCTTATCTGG TCAAAGGAAC TTGGCGGAGA CCTGACACAA 
ACCTCGACCC CCGCCATCGG GAACGGAACA CTGTTTGTCC CTACCATGGA AGGAAATCTC 
TACGCTTTTG ACCAGGAAAA CGGAAACGAG CTCTGGAAAG CACACGTAAC CGACGGCAAC 
CTGGAGTGTC CAATCACATA TTCTGACCAC AAACTCTACA TCGGAGACGG GCTTGAAGGA 
GGAACCGGAA CCAAATACTA CTACTGCTAC GACGACAGCG GAAACCTTGT CTGGAAGCAT 
GAAAACAATA ACATGTCAGG TTTTCTCTGG AGCGGGGCAG TAGTTGTCGG AAATTACCTG 
GTCTACCCGG TCTTCGAAGG TAAAATGGTC TGCCTCGAAA AAGATACAGG TACCTTCGTA 
GATGAGGTTG ACTTCAGCAA GAGTTCCGAC ATCTCTTTTG CACTTTCCGA CCCTGGAATG 
TTCCGAAGCT CCGTAACCTA CGCTGAAGGT GCCCTGTACA CCTCTTCGGA AAGAGGACAG 
GAAACAGGTT ACTGCTTCAA AGTAGGGTTT AACCCTGATA CAGGGCAGTT CCTTGATAGT 
GGATGGGCAA CCTCAATTGG CTTTTCGACA TCTACCCCTG TTGTGTATGA TGGAAGAGTT 
TATGTGGGAC ATGGAGAACA CGGCGAGACC GGGTCAATGT TCTGCCTGAA CGATTCCGAT 
GGAACTGTAA TCTGGGAAAC TCCGATTAGC GGAGGAGTAA AGTCTTCACC TGTTCTTTCG 
GTAGAGAATG GCGATCCGTA CATCTATTTC ACAGAAGCCA TAGTTGACGG CTCGATTTAC 
TGCCTGAACC CTGACGGGAC CCTTGCATGG CACTACAACC CACCGGAGGA TTCTGCATAC 
ACCCTGCAGG GTGCAGCTCT TTCCGACGGA AAGGTCTACT ACGGAACAGA TAATGGATAC 
CTGTACTGCA TCGGACAGGG CGAGGCTCTT CCTCCAGAAG CAAACTTCAG TTCGGACAAA 
CAGACAGGTT CTTTTCCTCT GACTGTTTCA TTCAAAGACA GATCCTTTAA CGCCAACAAA 
TTCCTCTGGG ACTTTGGGGA CGGAAACACT TCAACTGAAG TAAACCCGGT CCATACCTAT 
ACTGCAGAAG GTACTTACAC AGTGACCCTT ACCGTCCAGA ACGAACACGG GACGGATAAA 
AAAGTTGCCG AAGACTACAT TTACGCAGTC AAAGTTCCGA CTACCTGGCC GATTAAAAGA 
GGGGAGTCTA TCCAGGCAGC TATTAATTCA GCCGATTCCG GAGACATCAT CAAGGTATAT 
CCCGGGGAGT ATCACGAAGT CCTGACCATC GACAAGAATC TGACTCTAAA AGGCATCAAG 
GACCCTGTCC TGAACGCTTC GGGTTTCATA GACTCTTCAG GCGTAACCAT AAGTGCTGAC 
GGCGTTGAGT TCAGCGGCTT TGAAATTACA GGGACCGAAG AGATGTGCTT TGCAATTAAC 
GTCAATGCAA AGAACGTACT GATAGAAGAC AACCTTATAG ATGACTGCGC CGAAGGGGTA 
TGGTTACAGG GAACTGAAAA CACTCTCCGG CAGAATAATA TTTCCAACTG CTGGGACTTT 
GCAGCTGTTC TTGATAGCAC AGGAGACAAC CGGATCTATA AGAACACCTT CATCAACAAC 
AATGGAAAGA AAATGGGAGG TTCAAACGAC CATATATCCG GAGGGTCAGA CTCATTCTTC 
CAGAGCTCCG AACCAGTAGA ATATGTCTGG AATGGAACAA AACTGACAGG GTATATAGGT 
AATTACTACG ATGACTACGC AGGAAGCGAC TCAAATGGGG ACGGTATAGG GGATACGGCT 
TACACTGCTG ATGCAGGAAC TGATAAGTAC CCTCTGGTCC TTCCCTACTC AAATTATGTT 
GAAGAGCAGA AAAACGAGTC CATTCCTGAG AATTCCTGGT ACCAGTTCCA TGGAAAGGTT 
GACCACCTTG GCTACTCAGA AAGCGGGCCC AAGACCAATC AGACCGAGTG GATAAGTGAG 
GACATTGATG CAATCAGCAG TTCCTCCCCT GTTGCGGCCG GAGGAAAAGT CTTTGTGATA 
TGCGGGACCG CAGGAATGGA AGAGAGCACG GAGGATATTC CCCAGTTAGT AGCCTTGGAC 
GAATTTAGTG GAGATATTCT GTGGAACGTC AGCATTCCGA AAGCCGTATA CGGTTCGTGG 
GCTTCCCCTG CTTATGATGA CGGCATGGTC TTTACGGCCA CTGGCCCCGA ACTTGGCTGT 
TACGACGCAG AAACCGGAGA AAAAATCTGG TGTTTCAATG ATACTGTGGG AAGTCAGGGT 
GCGGTTAATA GTGGACCTGC TATTGCGGAT GGTATGGTAA TCTTTAGCGA TTGGGATGGA 
AGCCATTATT ACTGTCTTGA CGAATACACC GGATACTTGC TCTGGAGTTT TGAAGTCGTC 
GGAGATGCTC AGTCCGTCCC TGCATACGCG GACGGAAAGT TCTACCTGAC AAGCTGGGGA 
TATGGGACTT CTTATGCAGG CCATGCTTAC TGCGTGGACG CAGTAACAGG AGATCAGGTA 
TGGCACATTA ATAATATAGA ACAGAATTTC TGTGGATCCC CTGCTTATAA AGACGGGGTC 
CTCTACCTGA CAACCTACAA CTTCTACGGA GACGGAGACC TTCTTGCCCT GGACGCTGTT 
GACGGGAGCA TAATCTGGCA GCAAAATATC GAAAGGACAG ACTCAACTCC TGCATTTGCC 
TACGGAAATG TCTATGTTTG TGGAGGCTGC TCTGGTTTTT CCAATGTGCA GACCTACTGC 
TTCAACGCAA GTACGGGAGA AAAAGTCTGG GAAACCCCTT CCCTGACAGG AGAGAACGGG 
GGAATAGGAG GCTGGACATG TTCTGTTGCG GTAGCTGACG GGCTTGTCTA CGTCGGAACC 
GAAGGCAACG GATACTTCGG TTACAATGAC CTCTATGCTC TGGACGCCTT TACGGGAGAA 
GTAGCCTGGC ACACTCCACA TGCAGGATCT ACCCCAGCAC TTTCGGACGG TATGCTTTTC 
AGTATCGGAG CGGATCAGAA AGTCTATGCC TTCAAGGACT CTCTCTCTTC GCCTGTTGCT 
GACTTCTCTG CAGACATAAC ATCAGGTAAT GCGCCATTGA CAGTCAATTT CACCGACCAG 
TCCACAGGCA CCGTTTCGTC CTATTCGTGG GACTTTAATA ACGACGGAAC TGTGGACTCA 
ACTGAGCAGA ACCCTTCGCA TACCTATAAT GCAACCGGTA CCTACACTGT CAACCTTACG 
GTTACAAATG CAAAAGGGAG TGATTCAGAG GTGAAGACTG GGTACATTAA TGTTGGTAGC 
CAATCTTCAG CAAAGCCGGT AGCTGCATTT ACTGCGTCGC CTACTTCAGG AAAAACGCCA 
TTAAAGGTTA AATTTACTGA CACAAGCACT GGCTCTCCAA CTTCCTGGTT CTGGAAATTT 
GGAGACGGGT CAAAGTCATT CCTACAGAAT CCTGTTCACA AGTATTCAAA GGCAGGAATA 
TATACTGTTA ACTTGACAGT AAAGAATGCT AAAGGCAAGA ACACGGTAAC AAAAACAGAA 
TATATAAAAG TGATTACAAA ACCTGTGGCA AACTTTTCTG CGAGTCCAAC CTCAGGAAAA 
GCACCATTAA AGGTTACTTT TACTGACACA AGCACAGGAA TCCCTGCTAA ATGGAGATGG 
GACTTTGGAG ACGGAGCAAA GTCATTCCTT CAGAATCCGG TTCACAAATA TTCAAAAGCA 
GGAACATATA CTGTTAACTT GACAGTAAAG AATGCTAAAG GCAAAAACAC GGTAACAAAA 
ACAGAATATA TAAAAGTGAT TACAAAACCG GTTGCAAACT TCAACAGCAG TGTTACATCA 
GGAAAAGCAC CATTAAAGGT TAAATTTACT GACACAAGTA CAGGAATACC TGCTAAATGG 
AGCTGGGACT TTGGAGATGG ATCAGATTCA TTCCACCAGA ATCCGATTCA CAAGTATTCA 
AAGGCAGGAA CATATACGGT TAACTTAACA GTAAAGAATG CAGCAGGACG TAACACGGTA 
ACAAAAACAG AATATATAAA AATTACATAA 

 

Protein sequence

MKTIYYIFII VILSSIMVVS PASAKTWNVD TSQEILDALD NCADGDTIFV MNGVYEIGDN 
KIIKVPNLTF KGESRDGVII KSNSQILGVG GSNGAAPNCV IENFTGMLKT AGQKPNGITI 
YQSPGCIIQN VAINVPMSPI SINANDCIVR NCVFDDCSDS GISIGGKNNT FKNNIVSNIT 
SAFSLYIPNT ATENIIENNI FNNCNPVYLR GENSTVANNT FLNDIGAAIA LYSTTAKNNT 
IVRNNIVSNG IAINVVKNAG DGNKIYLNNF ANTSGMSGTP PAITYWNSTE PMEYTYNGTT 
HTGYLGNYWG TAYSGSDSDG NGIGDMSYTV PSSFGTDYDP LISSNENYGS SETHETPSAP 
VAGFSATPTS GNAPLTVNFT DQSTNTPTSW LWDFGDNSTD TEQNPSHVYA SAGNYTVNLT 
VANADGSDSE VKTECIVVSE PLSGAPVANF TANVTSGTAP LTVQFTDLSS GDGITSWAWD 
FDSDGTVDSN ETNPSHIYNS TGTYTVSLTV TGDGGSDTET KTNYITVSET VTESGWSQFQ 
KDSSHTGYTF NSVPTQDPEL LWQNLTSSEQ EPCGSGGINV PPVISGNTVF VTAGNASVWA 
FNKETGDLIW SKELGGDLTQ TSTPAIGNGT LFVPTMEGNL YAFDQENGNE LWKAHVTDGN 
LECPITYSDH KLYIGDGLEG GTGTKYYYCY DDSGNLVWKH ENNNMSGFLW SGAVVVGNYL 
VYPVFEGKMV CLEKDTGTFV DEVDFSKSSD ISFALSDPGM FRSSVTYAEG ALYTSSERGQ 
ETGYCFKVGF NPDTGQFLDS GWATSIGFST STPVVYDGRV YVGHGEHGET GSMFCLNDSD 
GTVIWETPIS GGVKSSPVLS VENGDPYIYF TEAIVDGSIY CLNPDGTLAW HYNPPEDSAY 
TLQGAALSDG KVYYGTDNGY LYCIGQGEAL PPEANFSSDK QTGSFPLTVS FKDRSFNANK 
FLWDFGDGNT STEVNPVHTY TAEGTYTVTL TVQNEHGTDK KVAEDYIYAV KVPTTWPIKR 
GESIQAAINS ADSGDIIKVY PGEYHEVLTI DKNLTLKGIK DPVLNASGFI DSSGVTISAD 
GVEFSGFEIT GTEEMCFAIN VNAKNVLIED NLIDDCAEGV WLQGTENTLR QNNISNCWDF 
AAVLDSTGDN RIYKNTFINN NGKKMGGSND HISGGSDSFF QSSEPVEYVW NGTKLTGYIG 
NYYDDYAGSD SNGDGIGDTA YTADAGTDKY PLVLPYSNYV EEQKNESIPE NSWYQFHGKV 
DHLGYSESGP KTNQTEWISE DIDAISSSSP VAAGGKVFVI CGTAGMEEST EDIPQLVALD 
EFSGDILWNV SIPKAVYGSW ASPAYDDGMV FTATGPELGC YDAETGEKIW CFNDTVGSQG 
AVNSGPAIAD GMVIFSDWDG SHYYCLDEYT GYLLWSFEVV GDAQSVPAYA DGKFYLTSWG 
YGTSYAGHAY CVDAVTGDQV WHINNIEQNF CGSPAYKDGV LYLTTYNFYG DGDLLALDAV 
DGSIIWQQNI ERTDSTPAFA YGNVYVCGGC SGFSNVQTYC FNASTGEKVW ETPSLTGENG 
GIGGWTCSVA VADGLVYVGT EGNGYFGYND LYALDAFTGE VAWHTPHAGS TPALSDGMLF 
SIGADQKVYA FKDSLSSPVA DFSADITSGN APLTVNFTDQ STGTVSSYSW DFNNDGTVDS 
TEQNPSHTYN ATGTYTVNLT VTNAKGSDSE VKTGYINVGS QSSAKPVAAF TASPTSGKTP 
LKVKFTDTST GSPTSWFWKF GDGSKSFLQN PVHKYSKAGI YTVNLTVKNA KGKNTVTKTE 
YIKVITKPVA NFSASPTSGK APLKVTFTDT STGIPAKWRW DFGDGAKSFL QNPVHKYSKA 
GTYTVNLTVK NAKGKNTVTK TEYIKVITKP VANFNSSVTS GKAPLKVKFT DTSTGIPAKW 
SWDFGDGSDS FHQNPIHKYS KAGTYTVNLT VKNAAGRNTV TKTEYIKIT