Gene Mbar_A1817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A1817 
Symbol 
ID3625275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp2270807 
End bp2272288 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content45% 
IMG OID637700699 
Productphycocyanin alpha phycocyanobilin lyase 
Protein accessionYP_305338 
Protein GI73669323 
COG category[C] Energy production and conversion 
COG ID[COG1413] FOG: HEAT repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0551014 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATATGA AAAAGCGAAG TCAATTTTGG AGTTGCAGGT ACACAAAACT CTTGCTTCTC 
TTAATTTTAC TTTCCAGTAT ATGTGCTGGG TGCCTTGTCC AGGATCCACT TGAAGCCAGA
GCAGAGAAAT TAGTTGGAAG CCTAGGGGAT GAAGATAAGG ATGTTGCTTC GGCTTCGACT
AATGCACTTA TCGATATTGG GGGACCTGCA GTTACCCCTC TGATTGAGGC TTTAAAAGAT
GAAAATCCGC AGGCACGCAG TTATGCTGCT CTTGCCCTTG GAGAAATAAG AGATAAAAAA
GCTGTGGAAC CTCTGATAGA AGTCCTTGAT GATCCCTCTC CTGAGGTTCG TATGAATGCA
GCTTATTCAC TTGGGGAAAT TGGAGACTTA AAGGCCGTTG AGCCCCTTAT TGAACTATTA
AAGGACGAAA ACGGGGAAGT AGTTCGCTTA ACCGTGATTG CGCTTGGATT ATTGAAAGAC
CCCAGGGCAA CTGAGCCTAT TTGTGAGGTT ATGGATCGTG ATGATGCCAG GATACGCCAT
GAGGATAATC CCGATATACG CCAGCAAGCT GTATACGCTC TTGCAGAAAT AGGAGATCCG
GGCTGTATTG ATACTCTTCT AGGTCTGCTG GATGATAAAG AACTAGGATA TTCGGCGGCC
AATACGCTTG GCAACTTTAA AAGTGAAGAC ATATTTGAAA AAGTAACTAA AAAGCTGCGG
AACAGTAACC CCACAGTCCG GACTAACGCC ATAGCAGTGT TTGAATCTAA TCGGGACCCT
GCTGTTGTTC CCCTCTTGAT TAAAATGCTG GATGATAAGG TTCCAGAGGT TCGAAAGGAC
GCCACTTTCA CCCTGGGTTT TTTTAAAGAA CCTGAACAGG TGGCACAGAG CGAGAAGCCC
CTGATTAATG CTCTTGGGGA CAGTAATCCC GAGGTGCAGG AAGGAGCTGC TCGTTCTCTC
GGAAGGTTAG GAAGTAAGGA AGCGATACCT TCTCTTGAAG GTCTCCTCCA ATCAAAGAAC
AAGAATCTTC AAGTTGCTGC CATTGAGGCT CTGGGAGATA TTGGAGATCC TGAGTCTGTA
GACGCTCTTA TTGCCACCCT TGAAGATGAA GACTGGTTCG TACGAGAAAA TATTGTGGAT
TCCCTGGTTG AAATAGGAGA TTCTCGAGCG ATTGAACCTT TGATTTCTTT ACTTGAAGAT
GAAAAATATA AAGTGAGGAG AAGTGCTGCA GAAGGCCTTG GGAAATTTGG AGATAGGAAA
GCTGTTGAAC CTCTCCTCAA GGCTCTTGAG ACCGAGAGAG AGGAGGAAGT AAGGCGTTCA
GAGGTTATGG CTCTGGGAAA ACTTGGAGGA CAACAAGCAA TGGAAGGTTT GAGCCGGATC
AGTACGGATC CAGATGAGTA CAAAAACGTC AGAAGCAATG CAGAGAAAGC ATTGGTGATA
CTCAAGGGAG GTGGGACAGT GAATGCCTCC TCTTTTTATT AA
 
Protein sequence
MHMKKRSQFW SCRYTKLLLL LILLSSICAG CLVQDPLEAR AEKLVGSLGD EDKDVASAST 
NALIDIGGPA VTPLIEALKD ENPQARSYAA LALGEIRDKK AVEPLIEVLD DPSPEVRMNA
AYSLGEIGDL KAVEPLIELL KDENGEVVRL TVIALGLLKD PRATEPICEV MDRDDARIRH
EDNPDIRQQA VYALAEIGDP GCIDTLLGLL DDKELGYSAA NTLGNFKSED IFEKVTKKLR
NSNPTVRTNA IAVFESNRDP AVVPLLIKML DDKVPEVRKD ATFTLGFFKE PEQVAQSEKP
LINALGDSNP EVQEGAARSL GRLGSKEAIP SLEGLLQSKN KNLQVAAIEA LGDIGDPESV
DALIATLEDE DWFVRENIVD SLVEIGDSRA IEPLISLLED EKYKVRRSAA EGLGKFGDRK
AVEPLLKALE TEREEEVRRS EVMALGKLGG QQAMEGLSRI STDPDEYKNV RSNAEKALVI
LKGGGTVNAS SFY