| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1670 |
|---|
| Symbol | |
|---|
| ID | 3626905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 2062060 |
|---|
| End bp | 2064927 |
|---|
| Gene Length | 2868 bp |
|---|
| Protein Length | 955 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637700550 |
|---|
| Product | ATP-dependent RNA helicase |
|---|
| Protein accession | YP_305193 |
|---|
| Protein GI | 73669178 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTTC ACAACATCTT TAACACTTTT CACCCAAAGA TTCAGGAAGC CATCAAAACT
CTTGGCTTTA CAAAACCCAC AGAACCTCAG GAAAGGTCAT TTCCTCACAT AATGGATGGA
AAGCATACTC TTTTGATAGC TCCGACGGGT TCAGGCAAGA CCGAATCAGC TGTGTTGCCG
GTTTTTGACA ATATCTTGAA AAAAAAGCCG GAAGCCAGAA AGGGAATTTC TGCCCTTTAT
ATAACTCCAT TGAGAGCACT TAACAGGGAT ATGCTTTCTC GTATTGAAAT CCTCGGGCAG
TTGCTCGACA TCAAAGTTCA GGTTCGGCAT GGGGATACTC CGCAAAGTGA AAGACAGCGC
CAGTCAAAAA ATCCACCTGA TGTACTGATC ACTACTCCTG AGACCTTGCA GGCAATGTTT
ACCGGCTCCC GCCTGCGCCA GAACCTCGAA ACCGTGACTC ATGTCGTGAT AGATGAAATC
CATGAACTTG CAGGTTCAAA ACGTGGAACT CAGTTGGCTG TTGGGCTTGA GAGGCTTGTA
GAAATTTCAG GAGAGTTCCA GAGAATCGGG CTTTCTGCGA CAGTCGGGAA CCCCTGGGAA
ATTTCAAAGT TCCTGGCAGG CAATGGAAGG GATTTCACTG TAATTGAGGT AGCCCTGTTG
AAACTGCTTG AGTTCGATGT GGTCAACCCT CAGGTTTCAG AAAAGGGAAA AATACGGGAA
AAAGAAGTCC TGAAAATTGC AAAAGCAGTT GGCTGCGAGC CTGAATTTGC CTCTCATCTG
CTCTGCATCC GGAAAATTGT CGAAGATAGC CAGTCGACTC TTATTTTTGT AAATACGCGG
CAGAGTGCCG AAGCTCTAGC TGCCGGTTTT CGGAAACTCG GTACATCCAT AGGGGTACAC
CATGGCTCGC TTTCTTTTGA AGCTCGTGTG GAGGCTGAGG AAGCCTTCAA ATCCGGAGCC
CTGAAAGGCC TTATCTGTAC CTCGTCAATG GAACTTGGAA TCGATATAGG AAACGTCGAC
CGGGTGGTCC AGTACGGGTC TCCACGCCAG GTTTCAAGGC TGCTCCAGAG AGTCGGAAGA
GCAGGGCATA AGCTGCATTC TGTTTCACGC GGCACTATTG TTTCTATGGA AGTCGATGAT
ACTGCAGAAA GTATGGCAAT TACGAAAGCT GCACTGGAAG GCAGGGTGGA AGAGGTTTCT
CCGCATATAA AATCCCTGGA TGTCGTGGCA AATCAGATTG CAGGCATGGT TATGGATTTC
GGGGAGATTG AAATTGATAA AATCCTAAGA ATTCTTCAAC GGACATACCC ATTCCGGGAT
CTGCAGCTTG AAGAACTGCA AAGGGTTGTG GACCAGATAG GGGACTACAA ACTGATATGG
CATGAAAAAG GTTCAAACAT TGTCAAGAGG CGTAGGAAAA GTCGGGAATA CTATTACGAA
AACCTTTCCA TGATTCCGGA CGAAAAAAAG TACGAAATCT ACGATATTGT AAGCGGAAAA
TCAGTCGGCG TGCTGGACGA AGCTTTTGTT GTTAATTTTG CAGAGCCGGG TGCCATTTTC
ATAACAAAAG GCTATATGTG GCGGGTCGTT GAGATGCCTG ACCGCGAGCA GGGGAAGGAT
AGGATCAAAG TCGAGCCCGT GGAAGGCACG GGTGAGGTTC CGAGCTGGAC CGGCGAAGAA
ATTCCTGTGC CTTTTGAGGT CGCTCAGGAT GTAGGAAAAC TAAGGGCGGA AATTGCAGCT
TTTATCCGCG CAGAACTTGA TGATGACGCT ATTGCCGAAC AGCTTCAGGC AAAATATCCG
GTAACAAGAA ATGCTGTGCT CGAATTAATC CGCCTGGTAC GCGAACACGT AGAAGGAGGC
TTCCCACTTC CTGATGCAGA GACGATTGTG ATCGAAGACG AAGGAGATGC TGTGACTCTG
AATGCCTGTT TCGGCCATAA CACAAACGGC ACCCTTGCTA GAGTCCTGAC CTCGCTTCTT
TCAGCCCGCT TTGGGAGCAG TGTTGCCCAG GAAGTCGACC CCTACAGGAT AAAGCTGACC
CTTCCGCGCC GGGTAGGCTC TTTCCAGATC CGAGACATGC TTCTCTCCCT CCGCCCTGAA
CACGTTGAGC CGATTATAGA AATGACCCTG AAAAATACAA CGCTGATGAA ATGGAAAATG
GTACACGTTG CCAGAAAATT CGGAGCCCTT TCCCGGGACA TTGACTACGA CCGGATCAGC
ATGAAAAAGC TGCTGGAAAT CTACCAGGGC TCTTCAATGT ACGACGAGGT AATCCGCGAA
ATCTTCCACG ACCTGCTTGA CGTCCCGAGG ACAAAAGAAG TCCTTAAAAA ACTTGCAGCC
GGCGAGATTT CAGTTGAAGT TTCCCTGCCA ACCCCGATAG GTTCAGCCGG TTTTGCCATG
AAAAAAGACC TGGTCGCACC GGAGAAAGCC GACCGTTCAA TCGTGCTTGC ACTTAAGGAA
CGCATTATGA ACGACAGAAT TATTTTATTC TGTACGAACT GCAAGAAATG GACTTCCCGC
CGGCAGGTCA AGAACGTCCC TGAAGAAATC GTCTGCCCGG TCTGCGAATC CAGGATGATT
GCAGCTCTCA AACCCTGGGA AGAAGAGGAA ATCAACCTTG TCAAAAAACA GGCAAAAAAG
GTCAAGGTTA CCCCCGAAGA AAAGAAACGT ATACAGAGAG TTTACAGAAA CGCAAGCATA
GTACACTCGC AGGGAAAAAA GGCGGTTATT GCGCTTGCGA GCAGAGGGGT TGGGCCTGAA
ACGGCGTCAA GGGTTATTGA AAAGATGAGG GTGGACGAAG AGGCATTTTA CAGGGATATT
CTGGTTGCAG AGAGGAATTA TGTGAAGACG AAGAAGTTCT GGGAATGA
|
|---|
| Protein sequence | MSFHNIFNTF HPKIQEAIKT LGFTKPTEPQ ERSFPHIMDG KHTLLIAPTG SGKTESAVLP
VFDNILKKKP EARKGISALY ITPLRALNRD MLSRIEILGQ LLDIKVQVRH GDTPQSERQR
QSKNPPDVLI TTPETLQAMF TGSRLRQNLE TVTHVVIDEI HELAGSKRGT QLAVGLERLV
EISGEFQRIG LSATVGNPWE ISKFLAGNGR DFTVIEVALL KLLEFDVVNP QVSEKGKIRE
KEVLKIAKAV GCEPEFASHL LCIRKIVEDS QSTLIFVNTR QSAEALAAGF RKLGTSIGVH
HGSLSFEARV EAEEAFKSGA LKGLICTSSM ELGIDIGNVD RVVQYGSPRQ VSRLLQRVGR
AGHKLHSVSR GTIVSMEVDD TAESMAITKA ALEGRVEEVS PHIKSLDVVA NQIAGMVMDF
GEIEIDKILR ILQRTYPFRD LQLEELQRVV DQIGDYKLIW HEKGSNIVKR RRKSREYYYE
NLSMIPDEKK YEIYDIVSGK SVGVLDEAFV VNFAEPGAIF ITKGYMWRVV EMPDREQGKD
RIKVEPVEGT GEVPSWTGEE IPVPFEVAQD VGKLRAEIAA FIRAELDDDA IAEQLQAKYP
VTRNAVLELI RLVREHVEGG FPLPDAETIV IEDEGDAVTL NACFGHNTNG TLARVLTSLL
SARFGSSVAQ EVDPYRIKLT LPRRVGSFQI RDMLLSLRPE HVEPIIEMTL KNTTLMKWKM
VHVARKFGAL SRDIDYDRIS MKKLLEIYQG SSMYDEVIRE IFHDLLDVPR TKEVLKKLAA
GEISVEVSLP TPIGSAGFAM KKDLVAPEKA DRSIVLALKE RIMNDRIILF CTNCKKWTSR
RQVKNVPEEI VCPVCESRMI AALKPWEEEE INLVKKQAKK VKVTPEEKKR IQRVYRNASI
VHSQGKKAVI ALASRGVGPE TASRVIEKMR VDEEAFYRDI LVAERNYVKT KKFWE
|
|---|
| |