| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1666 |
|---|
| Symbol | |
|---|
| ID | 3626901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 2054203 |
|---|
| End bp | 2057040 |
|---|
| Gene Length | 2838 bp |
|---|
| Protein Length | 945 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637700547 |
|---|
| Product | sensory transduction histidine kinase |
|---|
| Protein accession | YP_305190 |
|---|
| Protein GI | 73669175 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain
[COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.515191 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTATAG AAGATATTCT TTCACCTGCT CGGGAGGTGG ATAAACTGGA AATCACTGAT
ATCGTTGACG TTCAGGCGAT CCAGTCTATG ATGGACAACT TCTACAAGAT TACTCAGATA
CCCATGAGCC TGGACGATCT AAAAGGCAAT GTTCTGGTAG GCGTAGGATG GCAGGATATC
TGCACGCGAT TCCACAGAGT TCACCCCGAA ACCTGTAAGC ACTGCGTAGA GAGTGACATA
GAGCTGTCTG CAGGCATTTC TCCAGGAGAG TTCAAGCTCT ATAAATGCAA AAACAACATG
TGGGACATAG CGACTCCCGT TATAGTTGGC GGTCAGCACG TTGCCAATAT TTTCTCAGGT
CAGTTCTTTT TTGAAGATGA ACCTCTGGAC TATGAGCTTT TCCGCTCCCA GGCCAGAAAA
TATGGCTTTA ATGAGGAAGA ATACATAGCT GCGCTTGAAA AAGTTCCACG GTTGAGCAGG
GAAGCAGTGA ATACAGGCAT GGCCTTCTTT ATAACTTTTG CTAACGTTAT TTCACAGTTA
GGCTACAGCA ATCTTAAGCT GGCCCAGTCG CTGGCGGAAC GTGAAGACCT TCTGGGCGCA
TTAAAGGAGA GTGAAGAGCA GTTCCGTTCG GTCCTTGAGA ACTCACTCGA TGTAGCTTAC
AGACGAAACC TTCAGACCGA TAGATATGAT TACATAAGCC CGGTGGTAGA GAAGATTACT
GGCTTCTCTG CCCAGGAAAT AAGTTCAATG AACGAGAGTG AGGCTCTTGG TTGTATTCAT
CCCGATGATC GTCCCATAGT TACTTCGGGA CTGGCTCAGG CATGCGATAC TGTTTCTGGA
ACTCTGGAGT ACCGGTTTAA ACACAAGGAC GGCAGATATC GCTGGTTCTC TGATAGATTT
ATGGTGAATA AAGATTGGAA TGGAAAGCCA CTCTTCAGTG GAGGAATTGT CCGCGATATT
ACAGAGCGCA AAAAAGTTGA AGAGACTCTA AAAAAAACAC ATAAATGTCT AGAAGAAAAA
GTTAAAGAGC GAACAGCCGA GCTTGAGAAG GCTTACAATT CATTAAAAGA GAGTGAGACA
GGTCTTGCTG AAGCTCAGAA AATGGCTCAT ATTGGAAACT GGGAGTGGGA TATTGAAACT
GATAAAGCCT ACTGGTCTGA GGAAATGTAT CGTATTTTCG GACGTGATCC TCAAGAGTCA
GCACCTTCTT ACTATGAATA TTTAGGTTGT ATACATCCCG ATGACCGAGA CTACTACCGT
AATGCCCTTA AAAAAGCTGC AAAGAAAGAT CTTTTTGTTA TCGATTACAG GATTGTCTTA
GCAAATGGGG AAGAACGTAT AGTCCATCTA AAATCCGAAT TCGTGTATAA TAGTGAAAAC
ACCCCCACTA AAATAAAAGG AATAGTTCAG GACATTACTG AAAGTAAAAA AGCTGAAGAG
AAAATTCAGA CATTGTTGAA TGCAATGGAA TCATCGGACG ATGCTATTAT AACTGAGTCT
CTTGAATGTA TTATTACAAG CTGGAATAAG GGTGCAGAGC AGATTTATGA ATATTCAGCT
GAAGAAATTC TGGGGAAAAA TGTCTCAATC CTTGAACCGG ATAATCTCAA AGGGGAAATA
AAACAGTTAA TTGAAAAAAT TAAACAAAAA GAAAAGATCC GACATTACAA AACTCTGCAG
TTGAAAAAGG ATGGTACCTT AATAAATGCT TCAATAACTC TTTCTCCGGT TTTTGACGCA
TCTGGAAAGC TTGTAGCTAT CTCAGCTATT GTAAGGGACA TTACTGAGCG TGTCAAGGCG
GAAGAAGCAT TGCGTGAGAG CGAAAAGCGT CTACGTCGAT TTTACGAATC AGATATGATC
GGTGTGTGTT TCTACACTTT GAACGGTTCG ATAACAGATT CTAACGATAA GTTCCTGAAG
ATTGTCGGTT ACACTCGCGA GGACTTGCAG ACTGGGCAAA TTAAATGGGA TAAGATGACT
CCACCGGAAT ACTTTTCCCT GGATGAACGA GCTATTGCTG AACTCAAATC AAAAGGTGTG
AGTACTCTTT ATGAGAAGGA GTACATCCGC AAAGATGGCT CGCGCGTACC TGTCATTATT
GGAGTATCTA CCTTCAATGT GCCTTATGAA GGATTAGCCT TTGTTCTCGA TATCACCGAG
AAAAAAAAGG CAGAGGAAGC TCTGTCAAAT CTCGAGACTG CCCGTAAGAA AGAAATTCAC
CACAGGATCA AAAATAATCT GCAGGTTATC TCTTCTCTTC TTGATCTTCA GGCTGAGAAG
TTCGATAATC TCAATGTTAT TGAGGCTTTT AGGGAAAGCC AGAATCGAGT TATATCTATG
GCTCTCATCC ACGAAGAACT ATATAAAGGA GAGGGAACCG ACACCGTGAA TTTTTCTGAA
TACCTTAAAA AATTGGCTGA GAACCTTTTC CAGACTTACA GACTTTATAG TAAAAATCTC
GGCTTATTCA CAGATCTCGA AGAAAATGCA TTCTTTAATA TGGATACTGC TGTCCCGTTA
GGAATAATTG TTAATGAGCT AGTCTCCAAT TCCCTCAAAC ATGCGTTTAC TGAAGACCAA
GATGGGGAAA TTCGAATTAA GCTTTGCAGG AAAGGAACCA ATGACGAGAT AAGTAAATCT
CTTTTCATCC TGATAGTTTC AGATAATGGA AAAGGAATTC CTGATAATTT AGAATTAGGC
AATCTTGAAT CACTGGGACT GCAGTTAGTA AGTACTCTTG TTGACCAGCT TGGTGGGAAA
ATCGAACTTA AACGAAAACC GGGGACCAAA TTTAAAATTA CTTTTAGTGT AGTGGAAAAT
CCGAAGTCTA TGAATTAA
|
|---|
| Protein sequence | MTIEDILSPA REVDKLEITD IVDVQAIQSM MDNFYKITQI PMSLDDLKGN VLVGVGWQDI
CTRFHRVHPE TCKHCVESDI ELSAGISPGE FKLYKCKNNM WDIATPVIVG GQHVANIFSG
QFFFEDEPLD YELFRSQARK YGFNEEEYIA ALEKVPRLSR EAVNTGMAFF ITFANVISQL
GYSNLKLAQS LAEREDLLGA LKESEEQFRS VLENSLDVAY RRNLQTDRYD YISPVVEKIT
GFSAQEISSM NESEALGCIH PDDRPIVTSG LAQACDTVSG TLEYRFKHKD GRYRWFSDRF
MVNKDWNGKP LFSGGIVRDI TERKKVEETL KKTHKCLEEK VKERTAELEK AYNSLKESET
GLAEAQKMAH IGNWEWDIET DKAYWSEEMY RIFGRDPQES APSYYEYLGC IHPDDRDYYR
NALKKAAKKD LFVIDYRIVL ANGEERIVHL KSEFVYNSEN TPTKIKGIVQ DITESKKAEE
KIQTLLNAME SSDDAIITES LECIITSWNK GAEQIYEYSA EEILGKNVSI LEPDNLKGEI
KQLIEKIKQK EKIRHYKTLQ LKKDGTLINA SITLSPVFDA SGKLVAISAI VRDITERVKA
EEALRESEKR LRRFYESDMI GVCFYTLNGS ITDSNDKFLK IVGYTREDLQ TGQIKWDKMT
PPEYFSLDER AIAELKSKGV STLYEKEYIR KDGSRVPVII GVSTFNVPYE GLAFVLDITE
KKKAEEALSN LETARKKEIH HRIKNNLQVI SSLLDLQAEK FDNLNVIEAF RESQNRVISM
ALIHEELYKG EGTDTVNFSE YLKKLAENLF QTYRLYSKNL GLFTDLEENA FFNMDTAVPL
GIIVNELVSN SLKHAFTEDQ DGEIRIKLCR KGTNDEISKS LFILIVSDNG KGIPDNLELG
NLESLGLQLV STLVDQLGGK IELKRKPGTK FKITFSVVEN PKSMN
|
|---|
| |