| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1511 |
|---|
| Symbol | |
|---|
| ID | 3626912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 1868521 |
|---|
| End bp | 1871181 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637700397 |
|---|
| Product | peptidase family protein U32 |
|---|
| Protein accession | YP_305044 |
|---|
| Protein GI | 73669029 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0826] Collagenase and related proteases |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCTG AAAAACCGGA ACTGCTTGCC CCGGCAGGAG GCCTGGAAGC TTTTATTGCA
GCCGTAGAAA ATGGGGCAGA TGCCGTGTAC CTCGGAGCTC GGGCTTTCAG TGCTCGGGGG
TATGCCTCAA ACTTTTCAGA GAAAGAGCTT GAAGAAGCCG TCGATTATGC TCACCTGAGA
GGCGTGAAAG TATATGTAAC CGTAAATACG CTACTCAAGG ACGAAGAAGT AGAAAATGCC
CTCAAGTTGC TTTCCTGGCT GAGAGAAATT GGAACTGACG CAATCATAAT TCAGGATCTA
GGGCTTATCT CTCTTGCAAG AAAATATCTG CCTGACCTTT CACTGCATGC GAGCACGCAA
ATGACTTTGC ATAATAGCGA AGGGGTTGAA TTCGCAAAAA AAATGGGAAT AGAGAGGGCT
GTGCTCTCAA GGGAATGCTC GCTTGAAGAG ATAAAACGAA TTAAAGAGAA AACAGAGACT
GAAATCGAGG TTTTCATACA TGGGGCTCTC TGTATATCCT ATTCTGGCCA GTGCCTTTTG
AGCAGTCTTA TAGGGGGAAG AAGCGGAAAC CGTGGTTTCT GTGCCCAGCC GTGCCGTAAA
AAATACAGGC TGTACTGCGA AGGGAAACAA ATCAAAACAA CAGGCAGTTA CCTCTTAAGC
CCGAAAGACC TTAACACGAC TGCAGGCCTT GGAGCCCTTA TAAAAACCGG GATTGAATCT
TTCAAAATTG AAGGCCGGAT GAAAAGGCCG GAATATGTTG CAGGTGTTGT CAGGATTTAC
CGCCATCTGA TTGACAGGTA TATTGAAAAC CCTGCAGAAT ATTTCGTTTC CGAAGAAGAG
CAGGAAATAC TTACCCAGCT TTTTAACAGG GGTTTTACTC AGGGTTACTT TTTTGAAAAC
CCGCGCTGGG AGCTCATGAA CAGGGAAAAC CCCCACAACC GTGGAGTTCT GGCAGGTACG
GTTACCGGGT ATGACAGGCG TTTAAACCGT ATCCGCGTGA AACTTTCCCG GCCTCTTCGT
CTCGGAGACG GGATAATGGT TGAAAATGCA GAAACCAGGT CAGAAGATAA AGGAAAAATC
GTATCCTCAA TGTATACCGG AAAAGGTCCA GTATACAGTG CAAGAGTAGG AGATACGGTA
GAAATTCCTT TCGATTCAAG GGCACCCTCA GGAAGCACAG TATACAGGAC GCATGACAAA
AAGCTTATGG ATTCCCTTAA AAAAGAAAGT GAGTCAGGAA GCCTGAGGCC TAAAATCCCT
GTGTCTATTA CGGCAATCAT TGAGTCTGGA AGACCTGTCA GGCTTGAGGT AAAAGACAGG
GATTCAAATA CAGTAATAGT TGAGTCCGGG TATCTTGTCG AGAAAGCCGA AAAGCAGCCA
ACTTCAAAGG CCCGTATCGA AAAACAACTT TCAAAACTCG GAAACACGAT TTTTGAGGCT
GCTGAATTTT ATGTCAAAAT GGAAGAAGAT GTTTTTATTC CTGTAGGGCA GTTGAATGAG
CTGAGGACAA AAGCAATAGA GCAGCTTGAA AATCTGCGGA TTTCCAGGTG GAAGCGGAAA
CCTCTTGATA TTCTACAGTT CTACGACTCT GGAGAAAAGG GATCCAAAGA GAAGGAATCC
GTAGAAAAAG AATTCGTAGA AAAGGAATCT GTAGGAAAGG AATCTGTAGG AAAGAAATTC
GTAGAAAAAG AATCCATAGG AAAAGAATCC GTAGAAAAGG TGGGACAGGA AGCCAAAAAA
ACTATTCAAG AGCGCCTTTC TACATATCCA TTGCTCTCAG TTTCCGTGTA TTCCCTTGAA
GGGCTCGAAG GAGCACTCGC AGGTGGAGCC GATAGGATTT ATTTCGGCGA AGGGCTTTTT
AGAAAGCCGA AAAAAACAGA GCAAGAAAAT GGATCGGCAA AGGGACCTGA CGCAGTTTTT
GAGAAAGCAG TATTGGAGAC TCAAAAGGCA GGCAAGAATA TCTATTTCAT TACTCCAAAG
CTTGTTAAAG ACTCCAGAAT GGAGTCCGTA GAAAAAATTA TCTCTCGTGT AAGGAAACTG
GGAGCTGACG GGGTCCTTGT TTCAAATCTG GGAACCCTTG GCCTCGCAAA AACTGAGAAA
ATCCCTTTTA TTGCAGACAG TCCTCTTAAC ATCTTCAACA GCCGCACTTT TGACTTTATA
TTGAAGGAAG GGGCTCAGAT GGCTGTAATT TCTCCGGAGC TGACCCTTGA GGAATTAAAA
AGCATTGCGT CTCATGGGCC TGCAGAGTGT ATTATTTACG GCAGGCTTGA ACTGATGGAG
TCCGAACACT GCCTTATAGG CGGGCTGCTC GGGAACAATA AAGGTCAATG TAGTGCCCCA
TGCAGGTCAG GAAAGTTTAC ACTGGTAGAT GAGAAAAACT ACGAATTTCC CCTGCTCATG
GACTATGAAT GCAGGATGCA CCTCCTTAAC TCAAGATCGC TCTGCATGCT TGAATACCTC
CCTGAAATCC TCGAAAGCGG GGTTTCAAGC CTCAGGGTCG AAACTCTGGG AATGGATAAT
CCAGAAGAGA TCCGAAAAGT GACCCGAGCC TACAGGAGAG CAATTGATAC TTACCTTGAA
ACCGGGAAAA AGGGGCAGGA AAACTGCGAA AAGCTTGGAA AAGGCTTTAC TACAGGACAT
TATTTCAGAG GTGTGCAGTA A
|
|---|
| Protein sequence | MKPEKPELLA PAGGLEAFIA AVENGADAVY LGARAFSARG YASNFSEKEL EEAVDYAHLR
GVKVYVTVNT LLKDEEVENA LKLLSWLREI GTDAIIIQDL GLISLARKYL PDLSLHASTQ
MTLHNSEGVE FAKKMGIERA VLSRECSLEE IKRIKEKTET EIEVFIHGAL CISYSGQCLL
SSLIGGRSGN RGFCAQPCRK KYRLYCEGKQ IKTTGSYLLS PKDLNTTAGL GALIKTGIES
FKIEGRMKRP EYVAGVVRIY RHLIDRYIEN PAEYFVSEEE QEILTQLFNR GFTQGYFFEN
PRWELMNREN PHNRGVLAGT VTGYDRRLNR IRVKLSRPLR LGDGIMVENA ETRSEDKGKI
VSSMYTGKGP VYSARVGDTV EIPFDSRAPS GSTVYRTHDK KLMDSLKKES ESGSLRPKIP
VSITAIIESG RPVRLEVKDR DSNTVIVESG YLVEKAEKQP TSKARIEKQL SKLGNTIFEA
AEFYVKMEED VFIPVGQLNE LRTKAIEQLE NLRISRWKRK PLDILQFYDS GEKGSKEKES
VEKEFVEKES VGKESVGKKF VEKESIGKES VEKVGQEAKK TIQERLSTYP LLSVSVYSLE
GLEGALAGGA DRIYFGEGLF RKPKKTEQEN GSAKGPDAVF EKAVLETQKA GKNIYFITPK
LVKDSRMESV EKIISRVRKL GADGVLVSNL GTLGLAKTEK IPFIADSPLN IFNSRTFDFI
LKEGAQMAVI SPELTLEELK SIASHGPAEC IIYGRLELME SEHCLIGGLL GNNKGQCSAP
CRSGKFTLVD EKNYEFPLLM DYECRMHLLN SRSLCMLEYL PEILESGVSS LRVETLGMDN
PEEIRKVTRA YRRAIDTYLE TGKKGQENCE KLGKGFTTGH YFRGVQ
|
|---|
| |