| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1479 |
|---|
| Symbol | |
|---|
| ID | 3627536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 1823881 |
|---|
| End bp | 1825890 |
|---|
| Gene Length | 2010 bp |
|---|
| Protein Length | 669 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637700366 |
|---|
| Product | cell surface protein |
|---|
| Protein accession | YP_305015 |
|---|
| Protein GI | 73669000 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAC AGATGACCTT TTGTACTATA AGCTTAATTT CAATAGCCTT TATTTTGTGT
TTGTTTTTGT CTACGGCATC AGCAGATACA GCGGAAAGTG TTTTGCCTAC AATCACTGAG
ACTAAAATCA GCACTAGTGG ACACGTAGAC AATCCTGCTA TCTACAATAA CAGAATAGTA
TGGATAGATA TTGATTATGC AGAGCTAGAG ACATACTACG ATGTCTACAT GTATGATCTC
TCCACTAAAA AGGAAACTCA AATAACCACC AGTGGGCATG CAGGCGAAAA TCCTGCAATT
TATGGTGACA GAATAGTATA CTCCGATCAT TACGAAGGCT CGGAAATCTA CATGTATGAT
CTTTCCACTA AAAAAAGAAC TCAAATAACC ACCAGTGGAA ACGCAGAAGA TCCAGCTATT
TACAATAATA GGATAGTGTG GAGAGGAAAT TATGATATCT ACATGTATGA TCTCTCTACT
AAGAAGGAAA CCCAGATAAC CTCAGAAGAA TCAATCCAGA CAAATCCTTC TATCTATGGT
GACAGGATAG TATGGAATGA TGATCGCAAT GGAAATTGGG ATATCTACAT GTATAATGTT
TCCACTAAAA AAGAAACTCA AATCACCAAT GGATCATCAT GGGCAATCGA TCCTGCAATT
TATGGTGACA GAATAGTATG GATGGATGAA CGAAGTGGAA ACTATGATAT ATATATGTAT
GATCTTTCTA CTAAAAAGGA AACTCAGATA ACATCCAGTC CAGATGCTCA GACGCATCCT
GCTATCTATG GTAACAGGAT AGTGTGGGAG GATGATGGTG GAGAGGATGA TGATTATACA
AATCATGGTA TCTATATGTA TGATATTTCC ACTAACCAGA AAATGAAAAT TAGCAACAAA
GGATCAGCAC GCAATCCTGC TATTTACAGT AACAATGTAG TATGGAAATA TGTTGCAGAT
ATTTATGGAA ACGGTGACAT TTACATGGGT ACTATTTCAA GCGGAGAACC AGTAGCATCA
ATTGCTGCAT TCTCTGCAAA ACCTACCTCA GGAAAAGCAC CGTTAACAGT TGCTTTTAAG
GACGAAAGCA CAGGAACACC GACAAAGTGG ATATGGAACT TTGGAGATGG TTCAAAGTCA
TTCCTCCAGA ATCCGGTTCA CAAGTATTCA AAAGCAGGAA CATATACTGT TAGCTTAACG
GTAAAGAATG CCGCAGGACG TAACACGATA ACAAAAACAG ATTGTATAAC CGTGGCAGCA
AAACCCGTTG CTGCATTCTC TGCATCTCCC ACTTCAGGAA AAGTACCACT GAAGGTTCAG
TTTACTGACA CAAGCACAGG AACACCGACA AAGTGGATAT GGAACTTTGG AGACGGATCA
AAGTCATTTC ACCAGAATCC GGTTCACAAG TATTCAAAGG CAGGAACGTA TACTGTTAGC
TTAACAGTAA AGAATGCGGC AGGACGTAAT TCGATAACAA AAACAAAATA TATAACCGTG
ACAGTAAAAC CCGTTGCTGC ATTCTCTGCA TCTCCAACCT CAGGAAAATA TCCATTAAAC
GTTAAATTTA CGGACAAAAG TACCGGATCA CCAACGAAAT GGAAATGGGA CTTTGGAGAC
GGAACAAAGT CATTCCTTCA GAATCCAACG CATAAGTATT CAAAAGCAGG AAAGTACACA
GTAACCCTTA AAGTAACCAA TGCAGCAGGC ATCAATACGG CAACAAAATC AAATTATATA
ACCGTGACAG GAACTGCGCA AGCTCCGACT GCAGATTTCT GGGGCTGGCC ATTATCAGGA
AAAGCTCCAC TAAAGGTAAC ATTCACAGAG ACTAGCAAAG GATCGCCAAC CTCATGGAAA
TGGGATTTCG GAGATGGTAA ATATTCAACA GAAAAGAGTC CAACACACAC ATATTCATCT
GCGGGAACTT ACACGGTTAA ACTCATAGCA ACAAATGAAG CAGGAAGTAG TACAAAATCA
AAATGGAAAT ATATAAAAGT GGCAAAGTGA
|
|---|
| Protein sequence | MNKQMTFCTI SLISIAFILC LFLSTASADT AESVLPTITE TKISTSGHVD NPAIYNNRIV
WIDIDYAELE TYYDVYMYDL STKKETQITT SGHAGENPAI YGDRIVYSDH YEGSEIYMYD
LSTKKRTQIT TSGNAEDPAI YNNRIVWRGN YDIYMYDLST KKETQITSEE SIQTNPSIYG
DRIVWNDDRN GNWDIYMYNV STKKETQITN GSSWAIDPAI YGDRIVWMDE RSGNYDIYMY
DLSTKKETQI TSSPDAQTHP AIYGNRIVWE DDGGEDDDYT NHGIYMYDIS TNQKMKISNK
GSARNPAIYS NNVVWKYVAD IYGNGDIYMG TISSGEPVAS IAAFSAKPTS GKAPLTVAFK
DESTGTPTKW IWNFGDGSKS FLQNPVHKYS KAGTYTVSLT VKNAAGRNTI TKTDCITVAA
KPVAAFSASP TSGKVPLKVQ FTDTSTGTPT KWIWNFGDGS KSFHQNPVHK YSKAGTYTVS
LTVKNAAGRN SITKTKYITV TVKPVAAFSA SPTSGKYPLN VKFTDKSTGS PTKWKWDFGD
GTKSFLQNPT HKYSKAGKYT VTLKVTNAAG INTATKSNYI TVTGTAQAPT ADFWGWPLSG
KAPLKVTFTE TSKGSPTSWK WDFGDGKYST EKSPTHTYSS AGTYTVKLIA TNEAGSSTKS
KWKYIKVAK
|
|---|
| |