| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1283 |
|---|
| Symbol | |
|---|
| ID | 3627770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 1589353 |
|---|
| End bp | 1590294 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637700173 |
|---|
| Product | oligopeptide ABC transporter, permease protein |
|---|
| Protein accession | YP_304826 |
|---|
| Protein GI | 73668811 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000188378 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATATT TACTAAAAAG GGCAGGCTTC ATGGTTCTTA CACTTTTTGC GGTTTGTGCC
CTGACCTTTT TCCTTATGAA CATTATTCCA GGAGGTACGG CTGAGTTGAT TCTAAAGCAT
ACTCTCGTGG GCCTGGAAGA TAGCGTTACC GAAGAACAGC TTAGCCAGAT TTCAGGTAGA
TATAACCTGG ATGCCCCTCT TTACCTGCAG TTTTTCAGTT GGATTAAAGA AGCGTTATTA
AGAGGGGACA TCGGAACCTC CTATGTTTTC AAAAAGCCAG TCCTTTATCT TCTGGCTTTA
CGCCTTCCAG CAACTATCCA GCTTGCAGGG TTGAGTATGG TAATTGCAAT ACTTGCTGGA
GTAAGCCTGG GAATTTACTC AGCCCTAAGG GAAAACAAGA TTTCGGATCA CATTCTTAGG
ATTGTGACTC TCTTTGGAGT TTCAATGCCC GGTTTCTGGG TAGCCCTGCT TCTTATTCTG
ATATTTTCCC TTAAGCTGAA ACTCGTGCCT GTGACAGGTT ACGGGAGCCT GGAAAATCTG
CTTTTGCCAG CTGCAGCCCT TTCTCTTCAT TCCGTTGCTG CGGTTATGAG AGTTACGAGG
ACAAGCATGC TTGAGACCCT GGGACAGGAG TATATCAGGT TTGCAAAAGC CAAAGGGCTT
CCTTTATGGA AAATCGTAAG CAGGCATGCC CTTAAAAATA CCATGCTTCC TGTAATCACA
GTTATTGGTT TTCAGATGGG AAGCTTGCTT GGAGGATCGG TTGTGATTGA AAAGATCTTT
GCCTGGCCAG GGATCGGAAG CCTGCTTGTG GACTCTATTT CTGCCAGGGA TTTGCCTGTG
GTCCAGGGCT GTGTACTTGC GATCGTTACG ATGTTTCTCC TTGTGCATTT CTTTGTGGAT
ATGCTCTATA CCCATCTGGA CCCACGGATT AGGTACGGCT GA
|
|---|
| Protein sequence | MKYLLKRAGF MVLTLFAVCA LTFFLMNIIP GGTAELILKH TLVGLEDSVT EEQLSQISGR
YNLDAPLYLQ FFSWIKEALL RGDIGTSYVF KKPVLYLLAL RLPATIQLAG LSMVIAILAG
VSLGIYSALR ENKISDHILR IVTLFGVSMP GFWVALLLIL IFSLKLKLVP VTGYGSLENL
LLPAAALSLH SVAAVMRVTR TSMLETLGQE YIRFAKAKGL PLWKIVSRHA LKNTMLPVIT
VIGFQMGSLL GGSVVIEKIF AWPGIGSLLV DSISARDLPV VQGCVLAIVT MFLLVHFFVD
MLYTHLDPRI RYG
|
|---|
| |