Gene Mbar_A1233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A1233 
Symbol 
ID3624281 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp1527301 
End bp1527993 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content44% 
IMG OID637700123 
Product3,5-cyclic-nucleotide phosphodiesterase 
Protein accessionYP_304779 
Protein GI73668764 
COG category[R] General function prediction only 
COG ID[COG1409] Predicted phosphohydrolases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGAGA TTGCAAATTC CATGCTTGAA AACATAAACA GGAGTTCTCC GGATATTATA 
GTAATCACTG GTGACCTGAC GGAAAACGGG CTTGCAGCCG AGTACAATGG AGCAAAGAAA
TTCATTGACA GGATTGAATG CAAAAACAAA GTGATAGTTC CAGGAAACCA TGACTCTAGA
AATGCCGGTT ACCTCTTTTT TGAGGATCTT TTTAAAACCA GATCAACTTC TGGACAATTT
GGTGAGATCA CTGTAGTAGG GCTTGATTCT TCCCAGCCGG AACTCGACGA AGGGCATATT
GGTAGGGAAA ATTACAACTG GATAGAGAAT ACTTTCTCAG TAAACGGTTT CAAAGTTTTT
GCCCTTCACC ACCATCTTAT CCCGATCCCC AGAACTGGCA GGGGAAATAA TGTACTTGTA
GATGCAGGAG ATGTTCTGGA ACTCCTGGAC CGCTCTGGTG TCAACCTCGT GCTCTGTGGG
CACTGGCACA TCCCCTGGGT CTGGAGATTA AACGACATGC TTGTAATCAG TGCGGGAACT
GTCTGCTCTT CCAAAGTCCG TGGAAAAATG TCTCAGTGCT ACAATTTTAT TGAGGTTGAT
GCACCAGAAT CCGATTGCAA GCGCTGGCAT CTGCAAGTTT GCAGAGTTTT CTCTAGAGGA
GAAAAAGAGA AGGTTGTTGA TAGTATAATA TAA
 
Protein sequence
MPEIANSMLE NINRSSPDII VITGDLTENG LAAEYNGAKK FIDRIECKNK VIVPGNHDSR 
NAGYLFFEDL FKTRSTSGQF GEITVVGLDS SQPELDEGHI GRENYNWIEN TFSVNGFKVF
ALHHHLIPIP RTGRGNNVLV DAGDVLELLD RSGVNLVLCG HWHIPWVWRL NDMLVISAGT
VCSSKVRGKM SQCYNFIEVD APESDCKRWH LQVCRVFSRG EKEKVVDSII