Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A1208 |
Symbol | |
ID | 3624555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | - |
Start bp | 1493557 |
End bp | 1496373 |
Gene Length | 2817 bp |
Protein Length | 938 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637700098 |
Product | Hef nuclease |
Protein accession | YP_304755 |
Protein GI | 73668740 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1111] ERCC4-like helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.599416 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAGA ATCTTTTTTC TGAAAAACCT GGGTTCATGA AGCACCCGCT GATAAAACCC AATACCGTTG AGCAGAGGCT ATATCAGTTG AATCTTGCTG GAAAGGCACT CGAAGGATCA AGCCTTGTTG TGCTTCCTAC TGGGCTTGGA AAAACCATAA TAGCTCTTTT TGTAATTGTT TCCAGGCTTC AGCGTTTCGG GGGAAAAGCG CTGGTTCTTT CTCCAACAAA ACCGCTTGTT GAGCAGCATG CGGCTTTTTT CAAAAAAGTA ATGGCTCTTC CTGAAGATAA AATTCTCACT TTTACGGGCA GCATTGCGCC TGCAGAACGT GAAAAACTCT GGGCTCAGGG GGAATTGATA GTATCCACTC CTCAGGTGAT TGAAAACGAT CTTCTTACAA AAAGAATCAG CCTTGAAGAT GTAACCCACA TAACCTTTGA CGAAGCCCAC AGGGCAGTCG GAAATTACGC TTATACCTTT ATTGCGGAAA AATACTTCGA AAGCGCAAAA AACCCTCATG TGCTCGGAAT TACTGCAAGC CCTGGAAGTT CGGACGAGAA AATCTCTGAA GTCTGCCAGG CTTTGCACAT TGAAAATGTC TCGGTGAAAA CTGAGAAAGA TAAGGATGTC CGTCCTTATG TGCAGGAAAA AAAGATAGAA TGGTTTCAGG TTCAGCTTCC TTCCGAAATG GCCGAAATCC GGGGCTATCT GGAAAAAATT TTTGATGACC GGCTTGTAAC CGTAAGAGAT TTGGGTTTTT CAGTAGGCAG CAGGAAATAT GTCTCTAAAA AAGACCTCTT GCTTCTCCAG AAGAAACTGC AGGGTGAAAT CCGGATTGGA GGTGACCCTG CAGTTTTTAC TGCTATGTCT GTACTTGCGG AAATGTTGAA GGTGAATCAC GCCGTAGAAA TGATTGAGAC TCAGGGGCTT GAGCCCCTCA GGAAGTACCT GGAGAAACTT GATGCTGAAG CCTCTTCAAA CAGTGCAAGC AAGGCTTCAA AAAGACTGAT GGACGATCTC TACATGAGAA AAGCCCTTTA CAGAGTAAAG GAATGCGAGG TCGAACATCC AAAACTAGAG CTTGCACGAA AACTCGTATC CAAACAGCTA AAAGGAAGTC CTGATTCCAG AGTAATTGTT TTTACGAATT ACAGGGACAC AGCAGAGATA GTGGTAAATG CCCTCTCAGA AATTCCAGAA ATTGTCCCTA TCCGTTTTGT AGGGCAGGCC TCTCGCCGTA AGGACAAAGG GCTTACGCAA AAACAACAGG TGGAAGTTCT TGATAAGTTT AGAGCAGGAG AATATAACGT ACTTGTAGCT ACCTCAGTTG CTGAAGAAGG GCTTGATATC CCTTCAACAG ACCTGGTATT ATTCTACGAA CCCATTCCCT CGGAAATCCG GAGCATCCAG CGTAAAGGCC GAACAGGCAG ACAGCATAAA GGTAGAGTCA TTATACTTGT AACAAAGGGT ACACGCGATG AAGCCTATTA CTGGAGCAGT AAGAGCAAGG AAAAAAGGAT GCTAAATAGT ATGCACGGGC TTGAAGCTCT TCTGGACCCA AAAGACTCAA AGCAGGGTTT GAAACTTTCA GACTTTGAGT CCAAAGCTTT TATTCCGGCT GATACACAGA ACGAAGCTGG AAATGAGACT AAAATAAATA ACAGATTCGA AAATGCTAAT ATAACGCAGG AAAATCAAAA TCCGATGCAG AAAAGCAATG ATCTTGATGT AAATCTCAGT GGTTTTGTAA ACAGCAGGGG CAAAGCTGTA GATAGTAACG TTTTTGCAGA TAACAAGGAT GAGGCTGTAG ATAGCAGTAG TTTTGCAGAC ATCGGAGACA GGGCTACAGA TGTTAGATAT TTAGCTGCAG ACTGTGGGGA TTTAACTGTA GGCAGCAGGG ATATGGGGAC AGGGTCAGAC TACAACAAGG CGAATGAAGA AATTAACGAA GAGAACTGTG GGGTCGGAAA AGAAGAAGAA AGAAAGAAGA ATCGGAGTTG GAAAGAAAGC GAAAAAGGAA AAGAACAAAA GAATGAAGAA AAAAGCAAAG AAGAAAACGT AAAAGAAAGA CAAAAAACTT TTGTCTATTT TGAAACTCTT TCTGGAAAGA AAACGGAACT CACACCTGAA ACTGCTGCAG AAGTATCCAA AATAGAAACA AACTCCGAAT CCCCGAAAAT AGTAGTGGAC TTCAGGGAAG CAAAAAGCGG GGTTGCAAAT GTTCTCGATA AGCTTGGAGT AGAAGTTATT TTTACCACGC TTGAAATTGG TGATTACGTT GTAAGCGACC GCCTTGCCGT GGAGAGAAAG CGCACGGATG ACTTTGTAAA CTCTCTTGTT GATGGAAAAC GAAATCTTTT TGCACAATTA TCGGATCTTA CAAGAGTATA TCAAAAGCCT GTTCTTATTA TTGAAGGAAC AGAACTTTTC ACTTCAAGGC AAATCAACCC TAATGCTATT TACGGCTCCT TAATATCCAT TGCTATTGAT TTTGGAGTGT CACTATTATA TTCAAGAGAT GAAGAAGAAA CTGCTGCAAT TTTAAAAATG CTTGCAAAGC GTGAGCAGAT AGGAAATAAA AGAGAGGTCA ATCCCCACGG GAAAAAGTCA GCAAGTACCC TTCCCGAGCA GCAGGAATAC CTGGTATCCG CGATCGCAGA CATCGGGCCG AAAGCTGCAA GAAACCTTCT TTTGCACTTT GGCTCAGTAG AGGCTATTAT GAAAGCTGAT GCCAAAGAAC TCAAGAAAGT AAACTTAATA GGACCAAAAA GAGCAACAAA AATTAGAGAA CTCATTGAGG CTCCCTATAA AGGATAA
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Protein sequence | MNENLFSEKP GFMKHPLIKP NTVEQRLYQL NLAGKALEGS SLVVLPTGLG KTIIALFVIV SRLQRFGGKA LVLSPTKPLV EQHAAFFKKV MALPEDKILT FTGSIAPAER EKLWAQGELI VSTPQVIEND LLTKRISLED VTHITFDEAH RAVGNYAYTF IAEKYFESAK NPHVLGITAS PGSSDEKISE VCQALHIENV SVKTEKDKDV RPYVQEKKIE WFQVQLPSEM AEIRGYLEKI FDDRLVTVRD LGFSVGSRKY VSKKDLLLLQ KKLQGEIRIG GDPAVFTAMS VLAEMLKVNH AVEMIETQGL EPLRKYLEKL DAEASSNSAS KASKRLMDDL YMRKALYRVK ECEVEHPKLE LARKLVSKQL KGSPDSRVIV FTNYRDTAEI VVNALSEIPE IVPIRFVGQA SRRKDKGLTQ KQQVEVLDKF RAGEYNVLVA TSVAEEGLDI PSTDLVLFYE PIPSEIRSIQ RKGRTGRQHK GRVIILVTKG TRDEAYYWSS KSKEKRMLNS MHGLEALLDP KDSKQGLKLS DFESKAFIPA DTQNEAGNET KINNRFENAN ITQENQNPMQ KSNDLDVNLS GFVNSRGKAV DSNVFADNKD EAVDSSSFAD IGDRATDVRY LAADCGDLTV GSRDMGTGSD YNKANEEINE ENCGVGKEEE RKKNRSWKES EKGKEQKNEE KSKEENVKER QKTFVYFETL SGKKTELTPE TAAEVSKIET NSESPKIVVD FREAKSGVAN VLDKLGVEVI FTTLEIGDYV VSDRLAVERK RTDDFVNSLV DGKRNLFAQL SDLTRVYQKP VLIIEGTELF TSRQINPNAI YGSLISIAID FGVSLLYSRD EEETAAILKM LAKREQIGNK REVNPHGKKS ASTLPEQQEY LVSAIADIGP KAARNLLLHF GSVEAIMKAD AKELKKVNLI GPKRATKIRE LIEAPYKG
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