| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0922 |
|---|
| Symbol | |
|---|
| ID | 3627302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 1115729 |
|---|
| End bp | 1116457 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637699811 |
|---|
| Product | 3-dehydroquinate dehydratase |
|---|
| Protein accession | YP_304475 |
|---|
| Protein GI | 73668460 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0710] 3-dehydroquinate dehydratase |
|---|
| TIGRFAM ID | [TIGR01093] 3-dehydroquinate dehydratase, type I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCATA TTGGCCAGCT TGACCTTGAG AAAAAAGCTG CCGTTGTAGC AGTAATCCTT
GAAAAATCCC TTGAAATTTC AAGAAAGGCC GCCAAAATGG GGGCCGACCT TCTCGAAATT
CGGCTTGATT TGCTTGGGAT CAGGGACCTG GAAACAGCTG CAGAAACAAT CAGAAAAGTA
AAATCCGAAA CCGGACTTCC GGTAATTCTC ACAAATCGCT CAATTACGGA AGGAGGAAAA
TGGGAAGGAA AAGAGGCCGA TAGAATTGAA CTTCTTACAA ATCTCATTTC CCTGAAAGAC
GGGCCAGATG CAGTAGACAT AGAGCTCTCT GCTGGGAGAG AAGCAAGAGA CCAGGTAATA
AAAGCGGCAA AAGCCCACGG AAAAACTGTA ATCGTTTCTT CCCATGACTT TTCAAGGACT
CCGGCTTTTC AGGAAATGAA AACTATTCTG GAAGAGGCAT TTCTGGCAGG GGCAGATATT
GCGAAACTTG CTGTTATGCC GCAATCGAGA AGAGACGTAC TTAACCTGTT AAGAGTTGCA
CTGGATGCCA GGGAGGCAGG AAATGCTGTA TGTACGATTG CCATGGGTAG GCTTGGAAAA
CATACAAGGG TAATTGCTCC TTTCTACGGT TCGGTCCTGA CATATGCGGC TGTTAATAGT
GAAGTTTCTG CCGCGCCCGG GCAATTTCAG GTAGACGAAG TAAAGAAGAT ATTGGAGCTG
CTCGAATGA
|
|---|
| Protein sequence | MIHIGQLDLE KKAAVVAVIL EKSLEISRKA AKMGADLLEI RLDLLGIRDL ETAAETIRKV
KSETGLPVIL TNRSITEGGK WEGKEADRIE LLTNLISLKD GPDAVDIELS AGREARDQVI
KAAKAHGKTV IVSSHDFSRT PAFQEMKTIL EEAFLAGADI AKLAVMPQSR RDVLNLLRVA
LDAREAGNAV CTIAMGRLGK HTRVIAPFYG SVLTYAAVNS EVSAAPGQFQ VDEVKKILEL
LE
|
|---|
| |