| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0782 |
|---|
| Symbol | |
|---|
| ID | 3625390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 943747 |
|---|
| End bp | 945159 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637699673 |
|---|
| Product | putative transmembrane efflux protein |
|---|
| Protein accession | YP_304339 |
|---|
| Protein GI | 73668324 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000700007 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGATA GTACCGCGCA CCTTTCGCAC CCTACTGCCG TGCTCGCTTT CATTCTCGCC
AGCTACTTGA TGATCGCATT CGACATCTCA GTCGTCATTA CAGGGCTCCC GGAGATTCAG
AACAGTCTTG GTTTCTCAGC CACCGGACTC TCCTGGGTGC AGAACGCCTA TACACTCGTC
TCCGGGGGCT TGCTCCTTCT CGGATCTCGC ACTGGTGATA TTCTCGGCCG GCGTCGTATG
TTTATTGTTG GGATTGCGCT CTTCACTGTT GCATCGACAG CTGTTGGCTT GGCACCGTCT
GCTTCCTGGC TGATTGGCGC CCGCGCTTTT CAAGGTGTTG GGGCCGCGAT CCTGGCCCCG
ACGACACTTG CTCTTTTATC GGCAAACTTT GAAGGGGATG AGCGTACGCG TGCGTTAGCT
TACTACGGTG CCGTTGCCGG TGCAGGGGTC AGTGTAGGTC TTGTACTTGG CGGCATCCTC
ACCAGCTGGA TTTCTTGGCG TGTTGGTTTC TTTATTAATG TGCCTATAGG GATTGCCATG
ATTCTAGGCG CACTGCACTA CCTTGCCGAA ACCGAGATGC ATCCGAGCCA TTTTGACCTC
GCTGGCGCCA CAAGCTCAAC CCTGGGTATG ACTGCGCTTG TCTACGGCAT TGTACGTTCC
GCGACCGCTG GCTGGAGTGA TTCTTTCACT ATTGTAGCTC TCACTGCAGG CACCCTATTG
CTCGTATTTT TTGTTCTTAA TGAGTGGCGT GCAGAGCAGC CGATCATGCC ACTACATCTG
TTTGGAAATC GCGAACGTGT AGGAGCTTAC TCAGCCCGTA TGCTTTTCCT TGGTGCAACA
CTGGGCTTCG TTTTTTTTAC GACCCAGTTT CTCCAGGGTG TTAATAACTA CACTCCATTC
AAGGCTGGAC TCGCCTTTCT CCCTATGACG GTTGCGAATT TTGCAGCAGC TTTTACTATT
CCAAGACTTA CACGACAATT TGGCAACTCC CGCCTGCTCG CCTCTGGTAT CTTTATTACA
CTGATGGGGA TGGCCTGGAT TAGTCACCTC TCTGCTGATA CCCATTATCT TACCGGAATA
GCACTGCCGA TGGTTGTACT TGGTATCGGT CAGGGTATCA CCATGGGCCC TCTCACTGCA
TCAGGCATCG TCGGCGTCAC CAAAGAAGAT GCAGGCGCTG CCTCCGGGCT TGTCAATGTT
GCTCACCAGC TTGGTGGTTC ATTAGGACTC GCCATTCTGG TTACCGTATT TGCCACCGCC
AGCTCCACCA CGCTAGATGC CCAGCAACTA CTTGCACATC GAATAGCAAC ATCGCTCGCT
GCCGGTACGG TAATGCTTGC AATAGGACTT GTCATAGTCT TTGCGCTGAT CGTACGGCCC
AGCAATATCT TTCGTATTCC TGGTACGAAA TGA
|
|---|
| Protein sequence | MKDSTAHLSH PTAVLAFILA SYLMIAFDIS VVITGLPEIQ NSLGFSATGL SWVQNAYTLV
SGGLLLLGSR TGDILGRRRM FIVGIALFTV ASTAVGLAPS ASWLIGARAF QGVGAAILAP
TTLALLSANF EGDERTRALA YYGAVAGAGV SVGLVLGGIL TSWISWRVGF FINVPIGIAM
ILGALHYLAE TEMHPSHFDL AGATSSTLGM TALVYGIVRS ATAGWSDSFT IVALTAGTLL
LVFFVLNEWR AEQPIMPLHL FGNRERVGAY SARMLFLGAT LGFVFFTTQF LQGVNNYTPF
KAGLAFLPMT VANFAAAFTI PRLTRQFGNS RLLASGIFIT LMGMAWISHL SADTHYLTGI
ALPMVVLGIG QGITMGPLTA SGIVGVTKED AGAASGLVNV AHQLGGSLGL AILVTVFATA
SSTTLDAQQL LAHRIATSLA AGTVMLAIGL VIVFALIVRP SNIFRIPGTK
|
|---|
| |