| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0538 |
|---|
| Symbol | |
|---|
| ID | 3627097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 640156 |
|---|
| End bp | 641352 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637699430 |
|---|
| Product | alpha-amylase |
|---|
| Protein accession | YP_304099 |
|---|
| Protein GI | 73668084 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCGG TTTGCATGTA TTTCCAGGCA CATCAGCCTT TCAGACTGCG CAGGTTCTGG
CCTGATGATA GATCAGGTTT TTTCCGCTAT TTTGACGAGA GAAGCAACAG GGAGATCTTT
GAAAGAGTAG CTCGGAAATG CTATATTCCT ACAAACAAGC TCCTATTGGA TGCTCTTGAC
GAACATAAAG GAGAATTCAG GTTTTCTCTT TCAGTTACCG GAACCCTGCT CGAACAATGC
GAACTCTGGG GAAAAGATGC CCTTGAAGGC TTCCGGCAGA TGGCGGAAAC CGGAGCAGTG
GAATTTCTGG ACGAAACCTT TTATCATTCC CTTTCAAGTC TTTTTGAAGA CAAAACCGAA
TTTATTGAGG AGATAAAAGA ACATAGAGAA ATTATGTTTG ACCTTCTGGG AGTCAAACCT
CAGGTATTCC GGAATACCGA ACTGCTTTAC AATAACACTA TAGCAAAGCT TGTTTCGGAT
CTTGGGTACA GGGCGATCCT TACCGAAGGA GCGGACCATA TGCTTGAAGG GAGGTCACCT
AACGTACTTT ACAGGGCAAA AGGTTCAGGA CTTCCTATTA TCTTCAGGAA TTACAAGCTG
AGTGACGATA TAGGATACAG GTTTTCTGCG GGGTGGTGGG AAGGCTATCC CCTGACTGCA
AAGAAATGGG CCTTATGGGC TTCAGGAAAT AATGAAGATT GTGTTAATAT CTTTATGGAC
TATGAGACCT TTGGAGAGCA TCAGTGGGAA GAAACCGGGA TATTTTCCTT CCTGAAAGAA
CTTCCCGGGG AAGTACTCAA GACCCACCTG GACTTCAGCA CCCCTAGTGA ACTTGTCGAT
AAATATACAC CTGTCGCTGA TATCGATGTT GGAGACTTTT CCACAATTTC CTGGGCTGAT
ATGGAACGCG ATACAAGCGC ATGGCTTGGG AACGACATGC AAAGGCGCTG TTTTGAAGAA
ATAAAGCTGC TTGAACCCTT TGTGAGGAAG ACGGAGGACC CTGAAATCCT GCGTATATGG
AAGCATTTGC TGACTTCGGA CCATTACTAC TATATGTGTA CCAAATGGCT CGGAGATGGA
GATGTACATT CATATTTCAG TGTTCATTCC ACGCCTTTCG ATGCAGCAGT TAATTTCATG
GCTGTACTTA TGGATTTCAA AGCACAGGTA TTCAGAAAAC TTAGCACAAT AGCTTAA
|
|---|
| Protein sequence | MTSVCMYFQA HQPFRLRRFW PDDRSGFFRY FDERSNREIF ERVARKCYIP TNKLLLDALD
EHKGEFRFSL SVTGTLLEQC ELWGKDALEG FRQMAETGAV EFLDETFYHS LSSLFEDKTE
FIEEIKEHRE IMFDLLGVKP QVFRNTELLY NNTIAKLVSD LGYRAILTEG ADHMLEGRSP
NVLYRAKGSG LPIIFRNYKL SDDIGYRFSA GWWEGYPLTA KKWALWASGN NEDCVNIFMD
YETFGEHQWE ETGIFSFLKE LPGEVLKTHL DFSTPSELVD KYTPVADIDV GDFSTISWAD
MERDTSAWLG NDMQRRCFEE IKLLEPFVRK TEDPEILRIW KHLLTSDHYY YMCTKWLGDG
DVHSYFSVHS TPFDAAVNFM AVLMDFKAQV FRKLSTIA
|
|---|
| |