Gene Mbar_A0470 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A0470 
Symbol 
ID3624212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp565631 
End bp566503 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content43% 
IMG OID637699363 
Productnickel ABC transporter, permease protein 
Protein accessionYP_304032 
Protein GI73668017 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID[TIGR02790] nickel ABC transporter, permease subunit NikC 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCAGG TCAAAACTCA AGCAATAAAA AGATCGAATG CATGGTTTCA TTCATCCGAT 
GGCATTATAA ATTTTATATT TACGCAAAAA GAAGCAGTTT TCGGTTTTGT AATAGCGGCT
TTGATTATAG TCATTGCCAT AGCTGCATCT GTAATCGCGC CAAATGACCC TCTTAAGGTA
AATATGTCAA TGCGTTTAAC AGACCCAAGC TTGCTATATT GGCTTGGCAC CGACAATCTT
GGGCGATGCA TTGCATCTCG TCTGATCTGG GGAGCACGGA TGTCACTAAT ATACAGCCTG
TGCGTGCTGG GCCTTATGAT GGCAATTAGT ATCCCTATAG GACTCCTTTC TGGGTATGCA
GGCGGTCATA TAGACACGTT TATTATGCGA GTTATAGACA TATTTTTATC ACTTCCAACT
TTTCTGATGG CATTAGCCAT CGCCGGTATG CTGGAACCCA GTGCTAGAAA TATGATTATT
GCCATGGCCA GCGTGTGGTG GGCACCTTAT GCAAGAATAA TACGTGGTAT GGCAATGCAG
ATAAAGCAGC AGGACTTTAT GCTTGCAGCA AAAGCAGCCG CCTGTACTCA TACACAGATT
ATTTTTCGGC ACATACTTCG TAATATCGCC CCAACAATTA TTGTAATGGC CACACTTGAA
ATTGGTTCAA TTATACTGGC CATCGCGTCA TTTTCTTTTA TCGGGTTAGG TGCGCAGCCG
CCTACGCCTG AGTGGGGTGT TATGCTCAGC GACAGCAAAG AATTTATGCA GACACAGCCG
CAGCTGATGA TTTATCCGGG ACTTGCAATT ATGATCACAG TTATGGCATT TAATCTTCTG
GGGGAAGGAC TGAAAAATGC AATACAAAAA TGA
 
Protein sequence
MMQVKTQAIK RSNAWFHSSD GIINFIFTQK EAVFGFVIAA LIIVIAIAAS VIAPNDPLKV 
NMSMRLTDPS LLYWLGTDNL GRCIASRLIW GARMSLIYSL CVLGLMMAIS IPIGLLSGYA
GGHIDTFIMR VIDIFLSLPT FLMALAIAGM LEPSARNMII AMASVWWAPY ARIIRGMAMQ
IKQQDFMLAA KAAACTHTQI IFRHILRNIA PTIIVMATLE IGSIILAIAS FSFIGLGAQP
PTPEWGVMLS DSKEFMQTQP QLMIYPGLAI MITVMAFNLL GEGLKNAIQK