Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A0470 |
Symbol | |
ID | 3624212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | + |
Start bp | 565631 |
End bp | 566503 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637699363 |
Product | nickel ABC transporter, permease protein |
Protein accession | YP_304032 |
Protein GI | 73668017 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | [TIGR02790] nickel ABC transporter, permease subunit NikC |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCAGG TCAAAACTCA AGCAATAAAA AGATCGAATG CATGGTTTCA TTCATCCGAT GGCATTATAA ATTTTATATT TACGCAAAAA GAAGCAGTTT TCGGTTTTGT AATAGCGGCT TTGATTATAG TCATTGCCAT AGCTGCATCT GTAATCGCGC CAAATGACCC TCTTAAGGTA AATATGTCAA TGCGTTTAAC AGACCCAAGC TTGCTATATT GGCTTGGCAC CGACAATCTT GGGCGATGCA TTGCATCTCG TCTGATCTGG GGAGCACGGA TGTCACTAAT ATACAGCCTG TGCGTGCTGG GCCTTATGAT GGCAATTAGT ATCCCTATAG GACTCCTTTC TGGGTATGCA GGCGGTCATA TAGACACGTT TATTATGCGA GTTATAGACA TATTTTTATC ACTTCCAACT TTTCTGATGG CATTAGCCAT CGCCGGTATG CTGGAACCCA GTGCTAGAAA TATGATTATT GCCATGGCCA GCGTGTGGTG GGCACCTTAT GCAAGAATAA TACGTGGTAT GGCAATGCAG ATAAAGCAGC AGGACTTTAT GCTTGCAGCA AAAGCAGCCG CCTGTACTCA TACACAGATT ATTTTTCGGC ACATACTTCG TAATATCGCC CCAACAATTA TTGTAATGGC CACACTTGAA ATTGGTTCAA TTATACTGGC CATCGCGTCA TTTTCTTTTA TCGGGTTAGG TGCGCAGCCG CCTACGCCTG AGTGGGGTGT TATGCTCAGC GACAGCAAAG AATTTATGCA GACACAGCCG CAGCTGATGA TTTATCCGGG ACTTGCAATT ATGATCACAG TTATGGCATT TAATCTTCTG GGGGAAGGAC TGAAAAATGC AATACAAAAA TGA
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Protein sequence | MMQVKTQAIK RSNAWFHSSD GIINFIFTQK EAVFGFVIAA LIIVIAIAAS VIAPNDPLKV NMSMRLTDPS LLYWLGTDNL GRCIASRLIW GARMSLIYSL CVLGLMMAIS IPIGLLSGYA GGHIDTFIMR VIDIFLSLPT FLMALAIAGM LEPSARNMII AMASVWWAPY ARIIRGMAMQ IKQQDFMLAA KAAACTHTQI IFRHILRNIA PTIIVMATLE IGSIILAIAS FSFIGLGAQP PTPEWGVMLS DSKEFMQTQP QLMIYPGLAI MITVMAFNLL GEGLKNAIQK
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