| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0280 |
|---|
| Symbol | |
|---|
| ID | 3624400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 330591 |
|---|
| End bp | 333632 |
|---|
| Gene Length | 3042 bp |
|---|
| Protein Length | 1013 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637699172 |
|---|
| Product | TPR domain-containing protein |
|---|
| Protein accession | YP_303844 |
|---|
| Protein GI | 73667829 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4235] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.416311 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCTC TTTATGCCAG AGCCTGGTAC AGTAAAGCTC TTGCTTTTTT GAACTTGAAA
AACCAGATAG GTGCAGAGAA AAATTTTGAG AAGGCGCTTG AGGCTTTTGA TGCCGTACTT
GCGGTCAATC CTGAGGATAG CGTCGCCTGG CAGTACAGGG GAAATATACT TCGCTATCTG
GACCGTCCGG AAGAAGCCTT GCAGGCTTTT GAAAAGGCAC TTGATCTTGA TCCTGACAAT
ATTCCTGCAC GATACCTCAA AGGGCTTACC TTCGGATACC TTAACCTGAC AGAGCAGGCT
CTTGAGGCTT TTAATGGCGT GCTTGGGAGA GATGAAAAGC ACATCGGTGC TCTGTATTAT
AGCGGGCTTG CTTTAAAACA GCTCACACGA GACGAAGAAG CCCTTGAGGC TTTCACCAGA
GCAGCTGAGT TTAATCCCGA AAACTCGAAG GCCTGGTACT ATAGAGGGGT AATTCTATCC
GCATTTGGGA GAAATGAAGA AGCTCTCGAG GCTTATGGAA AAACCCTGAA GCTAGAACCT
TTGCATTCAG GGGCATGGGA AGGTGAGGCA AAAGCATACC TTGCTTTGAG CAGAAGGAGA
GAAGCTTTGA GAACCTGTGC AAAAGCTCTG GAACTCGAAC CCGCGTCTGC TGCGGCCTGG
GAAACTCAGG GTAGAATTCT CAAAGGCATG GGAAAGAAAG AGGAAGCACT TTCAGCTTTC
GAAAAAAGCC TTATCCTTGA GCCAGGAAAC ACAACAAACA GGCTAGAAAG GGGCAGGCTT
CTAGGACAGC TTGGTAGGCC CCTGGAAGCT CTTGACTCGT TTGAAAGTGT ACTTGAACTG
GACAACTCTA TTATAGAAGC AAAAGTCGGC AAAGGAAAAG CCTTGCTGGT GCTTGGAAGA
TACCAGGAAT CTCTTGATGC TTTCAGGAAA GTTCTTGAGC CTGAGCCTTT AAGTTCAGAG
GGATGGAAAG GAATAGGCAA CTGCTTTCTA GCTATGCGGA GGCCTCATGA AGCTTTGCAG
GCTTATGAAA AGGCCCTCTC CTCCGGAACT GAAAATTGCG GCATTTTGAG TGGTCTTGGA
GAAGTATATT ATACGCTTGG TGATTATTCA AAAGCTCTTG AAAGCTTCGA AGAGGCTCTC
AGGCTTGATT CCGAAAATCT TTTTGCGTGG AATGGAAGGG GAAATGCATT CTATAAGCTT
GGGAGATACG GTGAAGCTCT TGAGGCCTAT GAGACTCTTC TCGAACTTGA TTATGAAAGT
CTGCCTGCAC GATATAATCG AGGTGTCACT TTTTCCCAAC TCAAACATCA GGACACAGAC
TTTGAGGAAG TTCTTGGAAA TCGGCTCCAG ACAGCTTTTA TAAAATATCT GGAATTGTCT
GGAAGGCTTC CTGAAGGAGA AATTGGGGGT GAGAGCTGGA AGTACCGGGG TTTTGCTTTT
GCCGAGTTGG GAGATTATAG TGAAGCTCTT AAAGCCTTTG AAAATGCCAC AATAAATGGA
TCTGAAAGCT CTTTTCCCAG GGTTTGCAAA GGAATCACTC TTCTCTGCCT TAAAAATTAT
GAAAAAGCTC TGGAAACGTT TGAAGATGCC GAAAAGGATC TTTGTGCAGC CGTAGAATCG
GAGAAAGTCA TCAAAAGTGG GAAGTACAAA GAACCTGGGA GTTTAATACC TGATGAACTA
AATTTCATAC TGGAGATTCT TTTGAATGCT AAAGGGCTTA CTCTGGATGC CCTTAGCAGG
TATCAGGAGG CTTTAACAGC TTTTGAGGGT GCCAGGAAAC TTTCTGATGC TGAGAATATT
GCATGTTCTG GAAAAGGCCT GGTTTTTGCG CACTGTGGAG AGTGGGGAAA AGCTCTGAAA
GCATTTGATA GAATTCTTAC CCACGATCCT AAAAATACCC AGGCTTCAGT CATGAAAGCT
TTTGCCCTCA TAAGGTTGCA GGAGTTTGAT AAAGCTATTT CAGTCCTCGA GGAACTGACA
ACTGACGAGA TTAACTCAGA TTTGCCTTCG TGCCTGCTGG GCTTTGCCTG TTTCAGGCTG
GAAGATTTCG AAAGAGCACT CAAGGCATAC AGGAAAGCAA TCGATATAAA TCCAAAAAAT
TCTCACGCAA GAAATGGGCT CTCAGAGCTT TACTTCAGGC TTGGGGACAG CAGGGGTGCA
TTAAAAGAAC TTGAAGCTTC GATTGCAGAA GCCCCAGAGA ATTCATTCTC AAGAAACCTG
AAAGGTCGGG TAGAACTTGA AGAGCAGGCA TGTGAGGAAG CACTTGAGTC TTTCAGGCGA
GCTCTTGCCC TGGATTCGGA AGACCAGAGA CTGCTGCTCT GGGATGTGTA CGCAAGGTAT
ATGTATGCAG AGGCCTCTTT TGAGGAAAAT AGCGCACGTT TCAGGCATAT GCTCCTTGCA
GCTGCAGGAA AACTTGAAAA AGCAGCCATC TGGCAAAGGT CCGAAGATAA TGAACTGAAA
GCTTACGCCC TTTATTTTCT GGGGCTTTTT TACTGTCGAG CGCATTACTT CCGAAAAGCC
GCCGATAGGC TTAACGAATG CCTGAGCTTG GATCCTCCAG CCGAAGTAAA AAAGCCTGCA
GACTTGCTCC TTATAAATCT TCGTACAGGC CCTCTGAAAC CTACCTGGTG GAAATGGTGG
CTTGATGCAA AAACAAACCA CCTGCTTAAA AAGCTTAGTT TCTGGTTAAT TTTCCTTATT
ATATTCGGTC TTCTGCTGTC CCATCCGGCA GCGTTATCCC TTCCAATTAT CTCCTGGCCT
GCGGTTTATA TAAATCACCT TTTTTCTCTC ACAGGGAATA TTTCATGGCC GGTTTACGGT
AGAGAATACA TGGTCTTTAT CCTGTTTTTA GTTTTCATCC TGCTCCTGCC CGGTTTCAGG
CAAGGCAGAC CAAGTGAAGA AGAACTTGAA CCTCTTACAC CTCCATACCC TGATCTCGAT
ATTCCTGAAT CCATAATTGA GGAGTTTGGT GAAAAGCTCA AAAAAAGCCT GTTCTCTCCT
GAACCTATGG AAGAAAGCGT GAGTAAACTC GGAGATTTTT GA
|
|---|
| Protein sequence | MNSLYARAWY SKALAFLNLK NQIGAEKNFE KALEAFDAVL AVNPEDSVAW QYRGNILRYL
DRPEEALQAF EKALDLDPDN IPARYLKGLT FGYLNLTEQA LEAFNGVLGR DEKHIGALYY
SGLALKQLTR DEEALEAFTR AAEFNPENSK AWYYRGVILS AFGRNEEALE AYGKTLKLEP
LHSGAWEGEA KAYLALSRRR EALRTCAKAL ELEPASAAAW ETQGRILKGM GKKEEALSAF
EKSLILEPGN TTNRLERGRL LGQLGRPLEA LDSFESVLEL DNSIIEAKVG KGKALLVLGR
YQESLDAFRK VLEPEPLSSE GWKGIGNCFL AMRRPHEALQ AYEKALSSGT ENCGILSGLG
EVYYTLGDYS KALESFEEAL RLDSENLFAW NGRGNAFYKL GRYGEALEAY ETLLELDYES
LPARYNRGVT FSQLKHQDTD FEEVLGNRLQ TAFIKYLELS GRLPEGEIGG ESWKYRGFAF
AELGDYSEAL KAFENATING SESSFPRVCK GITLLCLKNY EKALETFEDA EKDLCAAVES
EKVIKSGKYK EPGSLIPDEL NFILEILLNA KGLTLDALSR YQEALTAFEG ARKLSDAENI
ACSGKGLVFA HCGEWGKALK AFDRILTHDP KNTQASVMKA FALIRLQEFD KAISVLEELT
TDEINSDLPS CLLGFACFRL EDFERALKAY RKAIDINPKN SHARNGLSEL YFRLGDSRGA
LKELEASIAE APENSFSRNL KGRVELEEQA CEEALESFRR ALALDSEDQR LLLWDVYARY
MYAEASFEEN SARFRHMLLA AAGKLEKAAI WQRSEDNELK AYALYFLGLF YCRAHYFRKA
ADRLNECLSL DPPAEVKKPA DLLLINLRTG PLKPTWWKWW LDAKTNHLLK KLSFWLIFLI
IFGLLLSHPA ALSLPIISWP AVYINHLFSL TGNISWPVYG REYMVFILFL VFILLLPGFR
QGRPSEEELE PLTPPYPDLD IPESIIEEFG EKLKKSLFSP EPMEESVSKL GDF
|
|---|
| |