| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0097 |
|---|
| Symbol | rpl5p |
|---|
| ID | 3626219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 110411 |
|---|
| End bp | 110920 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637698987 |
|---|
| Product | 50S ribosomal protein L5P |
|---|
| Protein accession | YP_303664 |
|---|
| Protein GI | 73667649 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0094] Ribosomal protein L5 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000268421 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTAACG TTATGCGCAC TCCCGTTGTT GAGAAGGTAA TTGTCCACAT GGGTGTTGGA
GAAAGTGGCC AGCATCTCGT AGACGCCGAA GAAATCCTCA GGAATATCAC AGGGCAGGAA
GTTGTCAGGT GCTTTGCCAA GAGGACTCTT CCGGCTTTCT CGATCAAGAA GAATGAACCT
ATAGGCTGCA AAGTAACCCT GAGAGGCCAG AGAGCTCAGC AGTTTCTCGA GACTGCTCTT
GGTATTGTCG ATAAGACTCT TGTCAGGTCC CAGTTTGACT CCCTTGGGAA TGTTTCTTTC
GGAATTGAAG AACACACTGA TTTTCCGGGC ATGAAATATG ACCCGAATAT CGGAGTTTTC
GGAATGGACG TAACAGTTGT TATCAAGCGC CCTGGAGAAA GAATCTGCAA GAGAAGGATT
GCAACAAGGA AGATCCCGAC TAACCACAGG GTCACACTTG AGGATTCTAT TGCTTTCCTT
AACGATAGCT ATGGCGTGGA GGTTATGTAA
|
|---|
| Protein sequence | MSNVMRTPVV EKVIVHMGVG ESGQHLVDAE EILRNITGQE VVRCFAKRTL PAFSIKKNEP
IGCKVTLRGQ RAQQFLETAL GIVDKTLVRS QFDSLGNVSF GIEEHTDFPG MKYDPNIGVF
GMDVTVVIKR PGERICKRRI ATRKIPTNHR VTLEDSIAFL NDSYGVEVM
|
|---|
| |